Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0024_L04
(418 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0043 + 5242496-5242554,5242673-5242778,5243586-5243723,524... 124 4e-29
12_02_0012 - 12309332-12310228,12311087-12311669,12311945-123120... 121 2e-28
02_02_0482 - 10819562-10819813,10820773-10820952,10822073-108221... 121 2e-28
04_04_0788 + 28064684-28066584,28066692-28066815,28066908-280672... 33 0.069
11_01_0558 - 4396750-4396986,4397699-4398050,4398266-4398504,439... 31 0.49
08_01_0682 + 5974622-5974745,5976182-5976371,5976953-5977024,597... 27 6.0
11_05_0007 - 18324969-18325063,18326580-18326745,18327078-183272... 27 8.0
08_02_1517 + 27642361-27643218 27 8.0
>03_02_0043 +
5242496-5242554,5242673-5242778,5243586-5243723,
5243794-5243979,5244075-5244275,5244362-5244460
Length = 262
Score = 124 bits (298), Expect = 4e-29
Identities = 55/91 (60%), Positives = 72/91 (79%)
Frame = +3
Query: 15 GRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVFCIGFTNKDTLSQRK 194
G+NVL NF GM TTDKLR +VKKWQTLIEA++DVKTTDGY+LR+FCIGFT + ++
Sbjct: 93 GKNVLTNFWGMSFTTDKLRSLVKKWQTLIEAHVDVKTTDGYMLRLFCIGFTKRRPNQVKR 152
Query: 195 TCYAFHTQVRAIRKKMCEIVTREVTSSELRE 287
TCYA +Q+R IR+KM EI+ + +S +L+E
Sbjct: 153 TCYAQASQIRQIRRKMVEIMANQASSCDLKE 183
Score = 54.0 bits (124), Expect = 5e-08
Identities = 22/43 (51%), Positives = 35/43 (81%)
Frame = +1
Query: 286 KVVNKLIPDSIAKDIEKACHGIYPLRDVCIRKVKVLKRPRFEI 414
++V+K IP+ I K+IEKA I+PL++V +RKVK+LK P+F++
Sbjct: 183 ELVSKFIPEVIGKEIEKATSSIFPLQNVFVRKVKILKAPKFDL 225
>12_02_0012 -
12309332-12310228,12311087-12311669,12311945-12312051,
12313190-12313237,12315139-12315216,12315300-12315500,
12315612-12315797,12315870-12316007,12318311-12318416,
12318529-12318587
Length = 800
Score = 121 bits (292), Expect = 2e-28
Identities = 54/91 (59%), Positives = 71/91 (78%)
Frame = +3
Query: 15 GRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVFCIGFTNKDTLSQRK 194
G+NVL NF GM TTDKLR +VKKWQTLIEA++DVKTTD Y+LR+FCIGFT + ++
Sbjct: 93 GKNVLTNFWGMSFTTDKLRSLVKKWQTLIEAHVDVKTTDNYMLRLFCIGFTKRRPNQVKR 152
Query: 195 TCYAFHTQVRAIRKKMCEIVTREVTSSELRE 287
TCYA +Q+R IR+KM EI+ + +S +L+E
Sbjct: 153 TCYAQASQIRQIRRKMVEIMVNQASSCDLKE 183
Score = 54.0 bits (124), Expect = 5e-08
Identities = 22/43 (51%), Positives = 35/43 (81%)
Frame = +1
Query: 286 KVVNKLIPDSIAKDIEKACHGIYPLRDVCIRKVKVLKRPRFEI 414
++V+K IP+ I K+IEKA I+PL++V +RKVK+LK P+F++
Sbjct: 183 ELVSKFIPEVIGKEIEKATSSIFPLQNVFVRKVKILKAPKFDL 225
>02_02_0482 -
10819562-10819813,10820773-10820952,10822073-10822150,
10823056-10823256,10823365-10823550,10823646-10823783,
10824396-10824501,10824634-10824692
Length = 399
Score = 121 bits (292), Expect = 2e-28
Identities = 54/91 (59%), Positives = 71/91 (78%)
Frame = +3
Query: 15 GRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVFCIGFTNKDTLSQRK 194
GRNVL NF GM TTDKLR +VKKWQTLIEA++DVKTTD Y+LR+FCIGFT + ++
Sbjct: 93 GRNVLTNFWGMSFTTDKLRSLVKKWQTLIEAHVDVKTTDNYMLRLFCIGFTKRRPNQVKR 152
Query: 195 TCYAFHTQVRAIRKKMCEIVTREVTSSELRE 287
TCYA +Q+R IR+KM EI+ + ++ +L+E
Sbjct: 153 TCYAQASQIRQIRRKMVEIMANQASTCDLKE 183
Score = 53.2 bits (122), Expect = 8e-08
Identities = 22/43 (51%), Positives = 35/43 (81%)
Frame = +1
Query: 286 KVVNKLIPDSIAKDIEKACHGIYPLRDVCIRKVKVLKRPRFEI 414
++V+K IP+ I K+IEK+ I+PL++V IRKVK+LK P+F++
Sbjct: 183 ELVSKFIPEVIGKEIEKSTSSIFPLQNVFIRKVKILKAPKFDL 225
>04_04_0788 +
28064684-28066584,28066692-28066815,28066908-28067285,
28067286-28067488,28067615-28067897
Length = 962
Score = 33.5 bits (73), Expect = 0.069
Identities = 19/71 (26%), Positives = 37/71 (52%), Gaps = 1/71 (1%)
Frame = +3
Query: 24 VLCNFHGMDLTTDKLRWM-VKKWQTLIEANIDVKTTDGYVLRVFCIGFTNKDTLSQRKTC 200
++C+ L KL + + KW+ L+ I + G+V+R+ C+ F ++ L ++K
Sbjct: 332 LVCSLSIRSLANKKLSGLHLWKWELLVFVLICGRLVSGWVIRI-CVFFVERNFLLRKKVL 390
Query: 201 YAFHTQVRAIR 233
Y + RA+R
Sbjct: 391 YFVYGVRRAVR 401
>11_01_0558 -
4396750-4396986,4397699-4398050,4398266-4398504,
4398608-4398709
Length = 309
Score = 30.7 bits (66), Expect = 0.49
Identities = 12/29 (41%), Positives = 19/29 (65%)
Frame = +1
Query: 280 FVKVVNKLIPDSIAKDIEKACHGIYPLRD 366
F ++VN IPD + + ++K C IY LR+
Sbjct: 32 FFQLVNTGIPDDLLERVKKVCSDIYKLRE 60
>08_01_0682 +
5974622-5974745,5976182-5976371,5976953-5977024,
5977482-5977553,5977688-5977759,5977842-5977913,
5978690-5978761,5978855-5978926,5979017-5979091,
5979529-5979594,5979821-5979885,5979975-5980354,
5980438-5980636,5980713-5980763,5980955-5981073,
5981190-5981400,5981524-5981755,5981842-5981992,
5982089-5982447,5982750-5982768
Length = 890
Score = 27.1 bits (57), Expect = 6.0
Identities = 14/48 (29%), Positives = 23/48 (47%)
Frame = -2
Query: 417 GDFKTRPLQYFHLPNADITKWVDTVTRLFDILSDGVRNQLVHDLHEAL 274
G++ + LQ+ D W T R+FDI GV + D+ +A+
Sbjct: 412 GNYSVK-LQFAEFAYPDSKTWESTGRRIFDIYVQGVLKEKNFDIRKAV 458
>11_05_0007 -
18324969-18325063,18326580-18326745,18327078-18327275,
18327377-18327643,18328070-18328129,18328767-18329033,
18329156-18329359,18329441-18331496,18332517-18333358
Length = 1384
Score = 26.6 bits (56), Expect = 8.0
Identities = 13/50 (26%), Positives = 25/50 (50%)
Frame = -1
Query: 178 VSLLVKPMQKTRRTYPSVVLTSMLASISVCHFFTIHLSLSVVRSMPWKLQ 29
+ LL+ +K++ P + S + + H F H+SL + ++ W LQ
Sbjct: 699 LELLLSTWEKSKEK-PFLDCFSCMKKLESLHIFAPHISLDFMLNVDWTLQ 747
>08_02_1517 + 27642361-27643218
Length = 285
Score = 26.6 bits (56), Expect = 8.0
Identities = 16/30 (53%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
Frame = +2
Query: 209 SYPSP--RNQEKNV*NRHARSDQFRAS*RS 292
SYPSP R QEKN+ H RS +S RS
Sbjct: 29 SYPSPEKRKQEKNIMAFHLRSASAPSSPRS 58
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,719,988
Number of Sequences: 37544
Number of extensions: 224813
Number of successful extensions: 527
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 512
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 527
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 754585524
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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