Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0024_L04
         (418 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z32681-6|CAA83605.1|  257|Caenorhabditis elegans Hypothetical pr...   102   9e-23
AC024855-2|AAM97980.2|  466|Caenorhabditis elegans Hypothetical ...    31   0.44 
AC024855-1|ABA00155.1|  468|Caenorhabditis elegans Hypothetical ...    31   0.44 
AC024206-1|AAF36050.2|  234|Caenorhabditis elegans Hypothetical ...    27   4.1  
AF106575-15|AAC78164.2|  350|Caenorhabditis elegans Serpentine r...    27   5.5  
Z78416-8|CAB01683.2|  588|Caenorhabditis elegans Hypothetical pr...    27   7.2  
Z69717-4|CAA93533.2|  588|Caenorhabditis elegans Hypothetical pr...    27   7.2  
L16685-1|AAA28170.3|  145|Caenorhabditis elegans Hypothetical pr...    26   9.5  

>Z32681-6|CAA83605.1|  257|Caenorhabditis elegans Hypothetical
           protein F56F3.5 protein.
          Length = 257

 Score =  102 bits (245), Expect = 9e-23
 Identities = 49/91 (53%), Positives = 61/91 (67%)
 Frame = +3

Query: 15  GRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVFCIGFTNKDTLSQRK 194
           G+NVL NFH M +T DKL  +VKKW TLIEAN  VKTTDGY LRVF I FT K     +K
Sbjct: 91  GKNVLTNFHAMSMTHDKLCSIVKKWHTLIEANTAVKTTDGYTLRVFVIAFTKKSVNQVKK 150

Query: 195 TCYAFHTQVRAIRKKMCEIVTREVTSSELRE 287
           T Y   +++R IR +M   + +EVT  +L+E
Sbjct: 151 TSYTKTSKIRKIRSEMIGCIEKEVTGCDLKE 181



 Score = 64.5 bits (150), Expect = 3e-11
 Identities = 27/43 (62%), Positives = 37/43 (86%)
 Frame = +1

Query: 286 KVVNKLIPDSIAKDIEKACHGIYPLRDVCIRKVKVLKRPRFEI 414
           +VV+KLIPDSI KDIEK C  +YPL++V IRKVK++KRP+ ++
Sbjct: 181 EVVSKLIPDSIGKDIEKTCSKLYPLQEVYIRKVKIIKRPKVDL 223


>AC024855-2|AAM97980.2|  466|Caenorhabditis elegans Hypothetical
           protein Y71G10AL.1a protein.
          Length = 466

 Score = 30.7 bits (66), Expect = 0.44
 Identities = 18/68 (26%), Positives = 36/68 (52%), Gaps = 4/68 (5%)
 Frame = +1

Query: 178 RSANARHATLFIPKSAQSGKKCV----KSSRAK*PVQSFVKVVNKLIPDSIAKDIEKACH 345
           RS + R   +F+P++  S K+      K  R   P +  ++++ K++PD     +++AC 
Sbjct: 331 RSGDGRRIKVFLPQTTVSLKRKEEFEGKLGRVIKPTERMMQLIVKILPDGYTPTLDEAC- 389

Query: 346 GIYPLRDV 369
             +PL+ V
Sbjct: 390 AWFPLQAV 397


>AC024855-1|ABA00155.1|  468|Caenorhabditis elegans Hypothetical
           protein Y71G10AL.1b protein.
          Length = 468

 Score = 30.7 bits (66), Expect = 0.44
 Identities = 18/68 (26%), Positives = 36/68 (52%), Gaps = 4/68 (5%)
 Frame = +1

Query: 178 RSANARHATLFIPKSAQSGKKCV----KSSRAK*PVQSFVKVVNKLIPDSIAKDIEKACH 345
           RS + R   +F+P++  S K+      K  R   P +  ++++ K++PD     +++AC 
Sbjct: 333 RSGDGRRIKVFLPQTTVSLKRKEEFEGKLGRVIKPTERMMQLIVKILPDGYTPTLDEAC- 391

Query: 346 GIYPLRDV 369
             +PL+ V
Sbjct: 392 AWFPLQAV 399


>AC024206-1|AAF36050.2|  234|Caenorhabditis elegans Hypothetical
           protein Y74C9A.3 protein.
          Length = 234

 Score = 27.5 bits (58), Expect = 4.1
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = -3

Query: 272 TGHFARDDFTHFFPDCADLGMKSVACLALAERI 174
           +GH   +D   FF  CA  G+K   C+ L + +
Sbjct: 139 SGHLVDEDLVDFFKRCAK-GLKPGGCIVLKDNV 170


>AF106575-15|AAC78164.2|  350|Caenorhabditis elegans Serpentine
           receptor, class w protein91 protein.
          Length = 350

 Score = 27.1 bits (57), Expect = 5.5
 Identities = 14/51 (27%), Positives = 28/51 (54%), Gaps = 4/51 (7%)
 Frame = -1

Query: 199 HVLRWLSVS----LLVKPMQKTRRTYPSVVLTSMLASISVCHFFTIHLSLS 59
           HV  WLS+      +   +  TR+   S  + S++ S+++C F ++ +S+S
Sbjct: 36  HVEFWLSIFGGILTIFHFLVLTRKAMKSTSIISLMISVAICDFLSMIVSIS 86


>Z78416-8|CAB01683.2|  588|Caenorhabditis elegans Hypothetical
           protein E01G6.3 protein.
          Length = 588

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 13/32 (40%), Positives = 16/32 (50%)
 Frame = +2

Query: 155 HRFHQQGYAQPTQDMLRFSYPSPRNQEKNV*N 250
           H F    +A+P    LRFS P   N  KN+ N
Sbjct: 41  HMFKNVPFAKPPLGKLRFSLPEWTNPWKNIRN 72


>Z69717-4|CAA93533.2|  588|Caenorhabditis elegans Hypothetical
           protein E01G6.3 protein.
          Length = 588

 Score = 26.6 bits (56), Expect = 7.2
 Identities = 13/32 (40%), Positives = 16/32 (50%)
 Frame = +2

Query: 155 HRFHQQGYAQPTQDMLRFSYPSPRNQEKNV*N 250
           H F    +A+P    LRFS P   N  KN+ N
Sbjct: 41  HMFKNVPFAKPPLGKLRFSLPEWTNPWKNIRN 72


>L16685-1|AAA28170.3|  145|Caenorhabditis elegans Hypothetical
           protein ZC21.8 protein.
          Length = 145

 Score = 26.2 bits (55), Expect = 9.5
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = +1

Query: 157 SVSPTRIRSANARHATLFIPKSAQSGKKCVKSS 255
           ++S T   S   R A+ F P   Q+GK C  S+
Sbjct: 104 TLSKTSSNSKMDREASYFAPNEKQTGKSCYMST 136


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,896,411
Number of Sequences: 27780
Number of extensions: 194669
Number of successful extensions: 477
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 470
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 477
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 683806592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)