Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0024_L04
         (418 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    21   4.2  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    21   5.6  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    21   5.6  
AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein...    21   7.4  
AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    21   7.4  
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    21   7.4  
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    20   9.7  

>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 21.4 bits (43), Expect = 4.2
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = +2

Query: 200 LRFSYPSPRNQEKNV*NRHARSDQ 271
           LR +    RNQ KNV +R  R D+
Sbjct: 438 LRANVAEGRNQRKNVLDRLFRMDR 461


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 21.0 bits (42), Expect = 5.6
 Identities = 9/17 (52%), Positives = 10/17 (58%)
 Frame = +2

Query: 221 PRNQEKNV*NRHARSDQ 271
           P+NQ KN  N H  S Q
Sbjct: 111 PKNQYKNQNNNHYTSHQ 127


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 21.0 bits (42), Expect = 5.6
 Identities = 9/26 (34%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
 Frame = +2

Query: 152 LHRFHQQGYAQPTQ-DMLRFSYPSPR 226
           L   ++QG+ QPTQ  M +  +  P+
Sbjct: 16  LSNAYKQGFCQPTQRTMSKIQWRKPK 41


>AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein
           protein.
          Length = 411

 Score = 20.6 bits (41), Expect = 7.4
 Identities = 6/26 (23%), Positives = 16/26 (61%)
 Frame = +3

Query: 39  HGMDLTTDKLRWMVKKWQTLIEANID 116
           +GM +  DK+   + +W+  + +N++
Sbjct: 54  NGMQIWNDKVFITIPRWKNGVPSNLN 79


>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
           protein.
          Length = 492

 Score = 20.6 bits (41), Expect = 7.4
 Identities = 7/16 (43%), Positives = 13/16 (81%)
 Frame = -1

Query: 304 SACSRPSRSSELVTSR 257
           S+C+RPSR + + +S+
Sbjct: 14  SSCTRPSRGNAVPSSQ 29


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 20.6 bits (41), Expect = 7.4
 Identities = 7/16 (43%), Positives = 13/16 (81%)
 Frame = -1

Query: 304 SACSRPSRSSELVTSR 257
           S+C+RPSR + + +S+
Sbjct: 14  SSCTRPSRGNAVPSSQ 29


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 20.2 bits (40), Expect = 9.7
 Identities = 6/23 (26%), Positives = 16/23 (69%)
 Frame = +1

Query: 280 FVKVVNKLIPDSIAKDIEKACHG 348
           ++++  ++  DS+A+++E   HG
Sbjct: 225 YIRIGLRIQSDSLAENVEGYVHG 247


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 114,832
Number of Sequences: 438
Number of extensions: 2230
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10626762
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)