Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0024_L03
         (87 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC119.02 |ubc4||ubiquitin conjugating enzyme Ubc4|Schizosaccha...    31   0.015
SPAC30D11.13 |hus5|ubc9|SUMO conjugating enzyme Hus5|Schizosacch...    29   0.11 
SPAC11E3.04c |ubc13|spu13|ubiquitin conjugating enzyme Ubc13|Sch...    25   1.3  
SPBC2D10.20 |ubc1||ubiquitin conjugating enzyme Ubc1|Schizosacch...    25   1.3  
SPAC1250.03 |ubc14||ubiquitin conjugating enzyme Ubc14|Schizosac...    23   5.4  
SPAC18B11.07c |rhp6|ubc2|Rad6 homolog, ubiquitin conjugating enz...    22   9.5  

>SPBC119.02 |ubc4||ubiquitin conjugating enzyme
           Ubc4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 147

 Score = 31.5 bits (68), Expect = 0.015
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = +1

Query: 4   ENWKPATTTDQVIQALVALVNDPEPEHP 87
           + W PA T  +V+ ++ +L+ DP P+ P
Sbjct: 91  DQWSPALTISKVLLSICSLLTDPNPDDP 118


>SPAC30D11.13 |hus5|ubc9|SUMO conjugating enzyme
           Hus5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 157

 Score = 28.7 bits (61), Expect = 0.11
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +1

Query: 4   ENWKPATTTDQVIQALVALVNDPEPEHP 87
           E WKPA T  Q++  +  L++DP    P
Sbjct: 101 EGWKPAITIKQILLGIQDLLDDPNIASP 128


>SPAC11E3.04c |ubc13|spu13|ubiquitin conjugating enzyme
           Ubc13|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 148

 Score = 25.0 bits (52), Expect = 1.3
 Identities = 9/28 (32%), Positives = 16/28 (57%)
 Frame = +1

Query: 4   ENWKPATTTDQVIQALVALVNDPEPEHP 87
           ++W PA     V+ ++ AL+  P P+ P
Sbjct: 92  KDWSPALQIRTVLLSIQALMGAPNPDDP 119


>SPBC2D10.20 |ubc1||ubiquitin conjugating enzyme
           Ubc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 217

 Score = 25.0 bits (52), Expect = 1.3
 Identities = 9/28 (32%), Positives = 15/28 (53%)
 Frame = +1

Query: 4   ENWKPATTTDQVIQALVALVNDPEPEHP 87
           + W P  T    + +L +L+  PEP +P
Sbjct: 95  DQWSPVYTMKSALISLQSLLCTPEPSNP 122


>SPAC1250.03 |ubc14||ubiquitin conjugating enzyme
           Ubc14|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 155

 Score = 23.0 bits (47), Expect = 5.4
 Identities = 7/26 (26%), Positives = 16/26 (61%)
 Frame = +1

Query: 10  WKPATTTDQVIQALVALVNDPEPEHP 87
           +KP+     V++ ++ L+ +P P+ P
Sbjct: 100 FKPSIKLRSVLEQILQLLREPNPDDP 125


>SPAC18B11.07c |rhp6|ubc2|Rad6 homolog, ubiquitin conjugating enzyme
           E2 Rhp6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 151

 Score = 22.2 bits (45), Expect = 9.5
 Identities = 7/26 (26%), Positives = 13/26 (50%)
 Frame = +1

Query: 10  WKPATTTDQVIQALVALVNDPEPEHP 87
           W P      ++ ++ +L+NDP    P
Sbjct: 96  WSPTYDVAAILTSIQSLLNDPNNASP 121


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.307    0.125    0.382 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 219,057
Number of Sequences: 5004
Number of extensions: 1578
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 2,362,478
effective HSP length: 10
effective length of database: 2,312,438
effective search space used: 41623884
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.6 bits)