Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0024_L03
(87 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_0198 - 17797574-17797717,17797995-17798099,17798509-177986... 33 0.032
04_04_1516 - 34122205-34122348,34122430-34122534,34122878-341230... 33 0.042
02_02_0339 + 9115297-9115366,9116280-9116407,9117537-9117641,911... 33 0.042
01_06_1150 + 34910941-34911010,34911611-34911738,34912025-349121... 33 0.042
09_02_0285 + 6894899-6895114,6896197-6896422,6896889-6896992,689... 32 0.055
02_01_0154 + 1078561-1078630,1078758-1078885,1079016-1079120,107... 31 0.096
01_06_0129 - 26770543-26770720,26774592-26774719,26774829-267749... 31 0.096
07_03_1012 + 23295976-23296264,23296475-23296548,23296972-232969... 31 0.13
10_08_0755 - 20329127-20329189,20329276-20329389,20329465-203296... 27 1.6
03_01_0159 + 1298002-1298070,1298181-1298264,1300354-1300506,130... 27 1.6
01_07_0028 - 40588611-40588718,40588812-40588901,40589966-405901... 27 2.1
04_04_0902 - 29262611-29262673,29262796-29262909,29262995-292631... 27 2.7
10_02_0151 + 5895708-5895736,5896291-5896403,5897956-5898064,589... 26 4.8
08_02_0468 - 17505905-17506002,17506295-17506424,17506662-175067... 26 4.8
01_06_0247 + 27851206-27851255,27851382-27851496,27852280-278524... 25 6.3
>06_03_0198 -
17797574-17797717,17797995-17798099,17798509-17798636,
17799444-17799513
Length = 148
Score = 33.1 bits (72), Expect = 0.032
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = +1
Query: 4 ENWKPATTTDQVIQALVALVNDPEPEHP 87
E W PA T +V+ ++ +L+ DP P+ P
Sbjct: 91 EQWSPALTVSKVLLSICSLLTDPNPDDP 118
>04_04_1516 -
34122205-34122348,34122430-34122534,34122878-34123005,
34124003-34124072
Length = 148
Score = 32.7 bits (71), Expect = 0.042
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = +1
Query: 4 ENWKPATTTDQVIQALVALVNDPEPEHP 87
E W PA T +V+ ++ +L+ DP P+ P
Sbjct: 91 EQWSPALTISKVLLSICSLLTDPNPDDP 118
>02_02_0339 +
9115297-9115366,9116280-9116407,9117537-9117641,
9118165-9118259,9119472-9119538,9119685-9119720
Length = 166
Score = 32.7 bits (71), Expect = 0.042
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = +1
Query: 4 ENWKPATTTDQVIQALVALVNDPEPEHP 87
E W PA T +V+ ++ +L+ DP P+ P
Sbjct: 91 EQWSPALTISKVLLSICSLLTDPNPDDP 118
>01_06_1150 +
34910941-34911010,34911611-34911738,34912025-34912129,
34912525-34912668
Length = 148
Score = 32.7 bits (71), Expect = 0.042
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = +1
Query: 4 ENWKPATTTDQVIQALVALVNDPEPEHP 87
E W PA T +V+ ++ +L+ DP P+ P
Sbjct: 91 EQWSPALTISKVLLSICSLLTDPNPDDP 118
>09_02_0285 +
6894899-6895114,6896197-6896422,6896889-6896992,
6897121-6897239,6897445-6897634
Length = 284
Score = 32.3 bits (70), Expect = 0.055
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = +1
Query: 4 ENWKPATTTDQVIQALVALVNDPEPEHP 87
E W PA T +V+ ++ +L+ DP P+ P
Sbjct: 91 EQWSPALTISKVLLSISSLLTDPNPDDP 118
>02_01_0154 +
1078561-1078630,1078758-1078885,1079016-1079120,
1079228-1079371
Length = 148
Score = 31.5 bits (68), Expect = 0.096
Identities = 10/28 (35%), Positives = 18/28 (64%)
Frame = +1
Query: 4 ENWKPATTTDQVIQALVALVNDPEPEHP 87
+ W PA T +V+ ++ +L+ DP P+ P
Sbjct: 91 DQWSPALTISKVLLSICSLLTDPNPDDP 118
>01_06_0129 -
26770543-26770720,26774592-26774719,26774829-26774933,
26775661-26775788,26777332-26777433,26778760-26778861,
26779777-26779852,26779971-26780059,26780177-26780230,
26780482-26780614,26780671-26780797,26781590-26781648
Length = 426
Score = 31.5 bits (68), Expect = 0.096
Identities = 10/28 (35%), Positives = 18/28 (64%)
Frame = +1
Query: 4 ENWKPATTTDQVIQALVALVNDPEPEHP 87
+ W PA T +V+ ++ +L+ DP P+ P
Sbjct: 315 DQWSPALTISKVLLSICSLLTDPNPDDP 342
>07_03_1012 +
23295976-23296264,23296475-23296548,23296972-23296996,
23297486-23297568,23297653-23297685,23298322-23298469,
23298625-23298722
Length = 249
Score = 31.1 bits (67), Expect = 0.13
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = +1
Query: 4 ENWKPATTTDQVIQALVALVNDPEPEHP 87
E W PA T +V+ A+ A++ +P+P P
Sbjct: 193 EGWSPALTISKVLLAIKAIITNPDPYCP 220
>10_08_0755 -
20329127-20329189,20329276-20329389,20329465-20329617,
20331790-20332035
Length = 191
Score = 27.5 bits (58), Expect = 1.6
Identities = 9/26 (34%), Positives = 15/26 (57%)
Frame = +1
Query: 10 WKPATTTDQVIQALVALVNDPEPEHP 87
W+PA T Q++ + L++ P P P
Sbjct: 135 WRPAITVKQILVGIQDLLDQPNPADP 160
>03_01_0159 +
1298002-1298070,1298181-1298264,1300354-1300506,
1300589-1300702,1300814-1300876
Length = 160
Score = 27.5 bits (58), Expect = 1.6
Identities = 9/26 (34%), Positives = 15/26 (57%)
Frame = +1
Query: 10 WKPATTTDQVIQALVALVNDPEPEHP 87
W+PA T Q++ + L++ P P P
Sbjct: 104 WRPAITVKQILVGIQDLLDQPNPADP 129
>01_07_0028 -
40588611-40588718,40588812-40588901,40589966-40590125,
40590547-40590595,40591158-40591338
Length = 195
Score = 27.1 bits (57), Expect = 2.1
Identities = 10/28 (35%), Positives = 16/28 (57%)
Frame = +1
Query: 4 ENWKPATTTDQVIQALVALVNDPEPEHP 87
+ W PA T + +L AL++ P P+ P
Sbjct: 95 DQWSPALTLKTALLSLQALLSAPAPDDP 122
>04_04_0902 -
29262611-29262673,29262796-29262909,29262995-29263141,
29264922-29265005,29265151-29265225
Length = 160
Score = 26.6 bits (56), Expect = 2.7
Identities = 9/23 (39%), Positives = 14/23 (60%)
Frame = +1
Query: 10 WKPATTTDQVIQALVALVNDPEP 78
WKP+ T Q++ + L +DP P
Sbjct: 104 WKPSITVRQILIGIQELFDDPNP 126
>10_02_0151 +
5895708-5895736,5896291-5896403,5897956-5898064,
5898580-5898658,5898747-5898863,5900001-5900138
Length = 194
Score = 25.8 bits (54), Expect = 4.8
Identities = 11/28 (39%), Positives = 13/28 (46%)
Frame = +1
Query: 4 ENWKPATTTDQVIQALVALVNDPEPEHP 87
E+WKP + VI L L P E P
Sbjct: 129 EDWKPVLNINTVIYGLNLLFTQPNDEDP 156
>08_02_0468 -
17505905-17506002,17506295-17506424,17506662-17506778,
17506881-17506959,17507546-17507654,17507857-17507969,
17510510-17510570,17511562-17511742,17512903-17512960,
17514292-17514497,17514582-17514671,17514752-17514813,
17514911-17514979,17515330-17515334,17516282-17516454
Length = 516
Score = 25.8 bits (54), Expect = 4.8
Identities = 9/28 (32%), Positives = 14/28 (50%)
Frame = +1
Query: 4 ENWKPATTTDQVIQALVALVNDPEPEHP 87
E+WKP + ++ L L + P E P
Sbjct: 421 EDWKPVLNVNTIVYGLNLLFSQPNDEDP 448
>01_06_0247 +
27851206-27851255,27851382-27851496,27852280-27852468,
27853698-27854057,27854138-27854201,27854365-27854504,
27854610-27854918,27855135-27855389
Length = 493
Score = 25.4 bits (53), Expect = 6.3
Identities = 10/25 (40%), Positives = 17/25 (68%)
Frame = +1
Query: 4 ENWKPATTTDQVIQALVALVNDPEP 78
E W P+ +T QV+ ++ ALV + +P
Sbjct: 341 EKWNPSNSTLQVLVSIQALVLNAKP 365
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.307 0.125 0.382
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,529,290
Number of Sequences: 37544
Number of extensions: 11053
Number of successful extensions: 39
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 39
length of database: 14,793,348
effective HSP length: 10
effective length of database: 14,417,908
effective search space used: 259522344
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.6 bits)
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