Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0024_L03
         (87 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U00035-7|AAA50648.2|  153|Caenorhabditis elegans Ubiquitin conju...    53   2e-08
Z66520-3|CAA91389.2|  160|Caenorhabditis elegans Hypothetical pr...    36   0.004
Z68337-1|CAA92745.1|  147|Caenorhabditis elegans Hypothetical pr...    29   0.34 
S56051-1|AAB25489.2|  147|Caenorhabditis elegans ubiquitin-conju...    29   0.34 
AC024747-1|AAO21404.1|  203|Caenorhabditis elegans Ubiquitin con...    27   1.4  
Z22179-13|CAA80166.1|  164|Caenorhabditis elegans Hypothetical p...    27   1.8  
AC024817-43|AAK93865.2|  151|Caenorhabditis elegans Ubiquitin co...    27   2.4  
AC025726-12|AAK73914.3|  243|Caenorhabditis elegans Ubiquitin co...    26   4.1  
U70849-3|AAK67232.1|  166|Caenorhabditis elegans Ubiquitin conju...    25   7.2  
AF106565-1|AAC97374.1|  166|Caenorhabditis elegans ubiquitin-con...    25   7.2  

>U00035-7|AAA50648.2|  153|Caenorhabditis elegans Ubiquitin
           conjugating enzyme protein18 protein.
          Length = 153

 Score = 53.2 bits (122), Expect = 2e-08
 Identities = 20/29 (68%), Positives = 26/29 (89%)
 Frame = +1

Query: 1   AENWKPATTTDQVIQALVALVNDPEPEHP 87
           AENWKPAT T+QV+ AL++L+N+PEP HP
Sbjct: 92  AENWKPATKTEQVMMALLSLINEPEPSHP 120


>Z66520-3|CAA91389.2|  160|Caenorhabditis elegans Hypothetical
           protein F49E12.4 protein.
          Length = 160

 Score = 35.9 bits (79), Expect = 0.004
 Identities = 13/28 (46%), Positives = 19/28 (67%)
 Frame = +1

Query: 4   ENWKPATTTDQVIQALVALVNDPEPEHP 87
           ENWKP TT + V+  L+ L+N+P+   P
Sbjct: 105 ENWKPETTMEDVLLNLIVLLNEPDLSRP 132


>Z68337-1|CAA92745.1|  147|Caenorhabditis elegans Hypothetical
           protein M7.1 protein.
          Length = 147

 Score = 29.5 bits (63), Expect = 0.34
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = +1

Query: 10  WKPATTTDQVIQALVALVNDPEPEHP 87
           W PA T  +V+ ++ +L+ DP P+ P
Sbjct: 93  WSPALTISKVLLSICSLLCDPNPDDP 118


>S56051-1|AAB25489.2|  147|Caenorhabditis elegans
           ubiquitin-conjugating enzyme protein.
          Length = 147

 Score = 29.5 bits (63), Expect = 0.34
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = +1

Query: 10  WKPATTTDQVIQALVALVNDPEPEHP 87
           W PA T  +V+ ++ +L+ DP P+ P
Sbjct: 93  WSPALTISKVLLSICSLLCDPNPDDP 118


>AC024747-1|AAO21404.1|  203|Caenorhabditis elegans Ubiquitin
           conjugating enzyme protein26 protein.
          Length = 203

 Score = 27.5 bits (58), Expect = 1.4
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = +1

Query: 4   ENWKPATTTDQVIQALVALVNDPEP 78
           + W PA T   +I  L++ +ND +P
Sbjct: 99  DTWNPAWTVSTIITGLMSFMNDNQP 123


>Z22179-13|CAA80166.1|  164|Caenorhabditis elegans Hypothetical
           protein F58A4.10 protein.
          Length = 164

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 8/28 (28%), Positives = 17/28 (60%)
 Frame = +1

Query: 4   ENWKPATTTDQVIQALVALVNDPEPEHP 87
           E W P  T + ++ ++++++ DP  E P
Sbjct: 107 ERWLPVHTVETILLSVISMLTDPNFESP 134


>AC024817-43|AAK93865.2|  151|Caenorhabditis elegans Ubiquitin
           conjugating enzyme protein13 protein.
          Length = 151

 Score = 26.6 bits (56), Expect = 2.4
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = +1

Query: 4   ENWKPATTTDQVIQALVALVNDPEPEHP 87
           + W PA     V+ ++ AL++ P PE P
Sbjct: 94  DKWSPALQIRTVLLSIQALLSAPNPEDP 121


>AC025726-12|AAK73914.3|  243|Caenorhabditis elegans Ubiquitin
           conjugating enzyme protein3 protein.
          Length = 243

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 7/28 (25%), Positives = 16/28 (57%)
 Frame = +1

Query: 4   ENWKPATTTDQVIQALVALVNDPEPEHP 87
           E W P  +   ++ ++++L+N+P    P
Sbjct: 113 ERWNPTQSVRTILLSVISLLNEPNTSSP 140


>U70849-3|AAK67232.1|  166|Caenorhabditis elegans Ubiquitin
           conjugating enzyme protein9 protein.
          Length = 166

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 9/28 (32%), Positives = 17/28 (60%)
 Frame = +1

Query: 4   ENWKPATTTDQVIQALVALVNDPEPEHP 87
           ++WKP+ +  Q++  +  L+N P  E P
Sbjct: 101 KDWKPSISIKQLLIGIQDLLNHPNIEDP 128


>AF106565-1|AAC97374.1|  166|Caenorhabditis elegans
           ubiquitin-conjugating enzyme 9homolog protein.
          Length = 166

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 9/28 (32%), Positives = 17/28 (60%)
 Frame = +1

Query: 4   ENWKPATTTDQVIQALVALVNDPEPEHP 87
           ++WKP+ +  Q++  +  L+N P  E P
Sbjct: 101 KDWKPSISIKQLLIGIQDLLNHPNIEDP 128


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.307    0.125    0.382 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,213,853
Number of Sequences: 27780
Number of extensions: 8756
Number of successful extensions: 49
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 49
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 49
length of database: 12,740,198
effective HSP length: 10
effective length of database: 12,462,398
effective search space used: 224323164
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.6 bits)