Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0024_L02
(152 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_UPI0000D563A2 Cluster: PREDICTED: similar to 60S riboso... 60 9e-09
UniRef50_O14377 Cluster: Putative uncharacterized protein; n=1; ... 59 2e-08
UniRef50_Q9FF90 Cluster: 60S ribosomal protein L13-3; n=27; Viri... 59 2e-08
UniRef50_P26373 Cluster: 60S ribosomal protein L13; n=111; Eukar... 55 3e-07
UniRef50_UPI00005A0D5A Cluster: PREDICTED: similar to ribosomal ... 53 1e-06
UniRef50_A3FQ93 Cluster: 60S ribosomal protein L13, putative; n=... 52 2e-06
UniRef50_Q4PAD9 Cluster: 60S ribosomal protein L13; n=2; Basidio... 52 3e-06
UniRef50_A0CPH3 Cluster: 60S ribosomal protein L13; n=9; Oligohy... 49 2e-05
UniRef50_A1D9H8 Cluster: 60S ribosomal protein L13; n=26; Fungi/... 44 5e-04
UniRef50_A2EYN3 Cluster: 60S ribosomal protein L13; n=6; Trichom... 44 9e-04
UniRef50_Q4X4D3 Cluster: 60S ribosomal protein L13, putative; n=... 41 0.005
UniRef50_Q57V55 Cluster: 60S ribosomal protein L13, putative; n=... 38 0.043
UniRef50_O15616 Cluster: 60S ribosomal protein L13; n=3; Entamoe... 35 0.30
UniRef50_O59931 Cluster: 60S ribosomal protein L13; n=5; Ascomyc... 33 0.92
UniRef50_A4SXJ1 Cluster: Polar amino acid ABC transporter, inner... 33 1.6
UniRef50_Q9AW85 Cluster: 60S ribosomal protein L13; n=1; Guillar... 32 2.1
>UniRef50_UPI0000D563A2 Cluster: PREDICTED: similar to 60S ribosomal
protein L13; n=1; Tribolium castaneum|Rep: PREDICTED:
similar to 60S ribosomal protein L13 - Tribolium
castaneum
Length = 198
Score = 60.1 bits (139), Expect = 9e-09
Identities = 24/34 (70%), Positives = 27/34 (79%)
Frame = +2
Query: 11 NNMIPNGHFHKDWQRFVKTWFNQPARRHRRKQNR 112
NNMIPNGHFHK WQ+ VK WFNQP ++ RRK R
Sbjct: 5 NNMIPNGHFHKKWQQKVKLWFNQPMKKLRRKALR 38
>UniRef50_O14377 Cluster: Putative uncharacterized protein; n=1;
Schizosaccharomyces pombe|Rep: Putative uncharacterized
protein - Schizosaccharomyces pombe (Fission yeast)
Length = 70
Score = 58.8 bits (136), Expect = 2e-08
Identities = 21/28 (75%), Positives = 25/28 (89%)
Frame = +2
Query: 20 IPNGHFHKDWQRFVKTWFNQPARRHRRK 103
+PN HFHKDWQR+VKTWFNQP R+ RR+
Sbjct: 12 LPNAHFHKDWQRYVKTWFNQPGRKLRRQ 39
>UniRef50_Q9FF90 Cluster: 60S ribosomal protein L13-3; n=27;
Viridiplantae|Rep: 60S ribosomal protein L13-3 -
Arabidopsis thaliana (Mouse-ear cress)
Length = 206
Score = 58.8 bits (136), Expect = 2e-08
Identities = 23/36 (63%), Positives = 28/36 (77%)
Frame = +2
Query: 5 KGNNMIPNGHFHKDWQRFVKTWFNQPARRHRRKQNR 112
K NN+IP+ HF K WQ +VKTWFNQPAR+ RR+ R
Sbjct: 2 KHNNVIPSSHFRKHWQNYVKTWFNQPARKTRRRVAR 37
>UniRef50_P26373 Cluster: 60S ribosomal protein L13; n=111;
Eukaryota|Rep: 60S ribosomal protein L13 - Homo sapiens
(Human)
Length = 211
Score = 55.2 bits (127), Expect = 3e-07
Identities = 22/34 (64%), Positives = 26/34 (76%)
Frame = +2
Query: 11 NNMIPNGHFHKDWQRFVKTWFNQPARRHRRKQNR 112
N M+ HFHKDWQR V TWFNQPAR+ RR++ R
Sbjct: 6 NGMVLKPHFHKDWQRRVATWFNQPARKIRRRKAR 39
>UniRef50_UPI00005A0D5A Cluster: PREDICTED: similar to ribosomal
protein L13 isoform 4; n=1; Canis lupus familiaris|Rep:
PREDICTED: similar to ribosomal protein L13 isoform 4 -
Canis familiaris
Length = 102
Score = 53.2 bits (122), Expect = 1e-06
Identities = 22/30 (73%), Positives = 23/30 (76%)
Frame = +2
Query: 11 NNMIPNGHFHKDWQRFVKTWFNQPARRHRR 100
N MI HFHKDWQR V TWFNQPAR+ RR
Sbjct: 6 NGMILKPHFHKDWQRRVATWFNQPARKIRR 35
>UniRef50_A3FQ93 Cluster: 60S ribosomal protein L13, putative; n=2;
Cryptosporidium|Rep: 60S ribosomal protein L13, putative
- Cryptosporidium parvum Iowa II
Length = 207
Score = 52.0 bits (119), Expect = 2e-06
Identities = 17/31 (54%), Positives = 27/31 (87%)
Frame = +2
Query: 11 NNMIPNGHFHKDWQRFVKTWFNQPARRHRRK 103
NN+IPN H+HK+++R++KTW+NQP R+ R+
Sbjct: 4 NNVIPNVHYHKNYKRWIKTWYNQPGRKQSRR 34
>UniRef50_Q4PAD9 Cluster: 60S ribosomal protein L13; n=2;
Basidiomycota|Rep: 60S ribosomal protein L13 - Ustilago
maydis (Smut fungus)
Length = 209
Score = 51.6 bits (118), Expect = 3e-06
Identities = 20/36 (55%), Positives = 25/36 (69%)
Frame = +2
Query: 5 KGNNMIPNGHFHKDWQRFVKTWFNQPARRHRRKQNR 112
K NN++ N HF KDWQR VK WF+QP + RR+ R
Sbjct: 4 KHNNILHNNHFRKDWQRRVKVWFDQPGAKKRRRTAR 39
>UniRef50_A0CPH3 Cluster: 60S ribosomal protein L13; n=9;
Oligohymenophorea|Rep: 60S ribosomal protein L13 -
Paramecium tetraurelia
Length = 208
Score = 49.2 bits (112), Expect = 2e-05
Identities = 19/36 (52%), Positives = 24/36 (66%)
Frame = +2
Query: 5 KGNNMIPNGHFHKDWQRFVKTWFNQPARRHRRKQNR 112
K N +PN H K W RFVKT++NQPA + RR+ R
Sbjct: 2 KHNQQLPNAHMRKHWTRFVKTFYNQPAAKRRRQLRR 37
>UniRef50_A1D9H8 Cluster: 60S ribosomal protein L13; n=26;
Fungi/Metazoa group|Rep: 60S ribosomal protein L13 -
Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / NRRL
181)(Aspergillus fischerianus (strain ATCC 1020 / DSM
3700 / NRRL 181))
Length = 243
Score = 44.4 bits (100), Expect = 5e-04
Identities = 16/27 (59%), Positives = 22/27 (81%)
Frame = +2
Query: 35 FHKDWQRFVKTWFNQPARRHRRKQNRI 115
FHKDWQR V+ F+QP R+HRR++ R+
Sbjct: 31 FHKDWQRRVRVHFDQPGRKHRRREARL 57
>UniRef50_A2EYN3 Cluster: 60S ribosomal protein L13; n=6;
Trichomonas vaginalis G3|Rep: 60S ribosomal protein L13
- Trichomonas vaginalis G3
Length = 210
Score = 43.6 bits (98), Expect = 9e-04
Identities = 18/34 (52%), Positives = 21/34 (61%)
Frame = +2
Query: 11 NNMIPNGHFHKDWQRFVKTWFNQPARRHRRKQNR 112
NN IPN H K W VKT+F+ PAR RR+ R
Sbjct: 26 NNQIPNDHLRKYWYHRVKTYFDDPARAQRRRNAR 59
>UniRef50_Q4X4D3 Cluster: 60S ribosomal protein L13, putative; n=5;
Plasmodium|Rep: 60S ribosomal protein L13, putative -
Plasmodium chabaudi
Length = 215
Score = 41.1 bits (92), Expect = 0.005
Identities = 15/31 (48%), Positives = 23/31 (74%)
Frame = +2
Query: 11 NNMIPNGHFHKDWQRFVKTWFNQPARRHRRK 103
NN++PN H HK WQR+V+ FN+ +R +R+
Sbjct: 5 NNVLPNVHLHKWWQRYVRVDFNKNIKRKQRR 35
>UniRef50_Q57V55 Cluster: 60S ribosomal protein L13, putative; n=7;
Trypanosomatidae|Rep: 60S ribosomal protein L13,
putative - Trypanosoma brucei
Length = 229
Score = 37.9 bits (84), Expect = 0.043
Identities = 19/43 (44%), Positives = 26/43 (60%), Gaps = 6/43 (13%)
Frame = +2
Query: 5 KGNNMIPNGHFHKDWQRF------VKTWFNQPARRHRRKQNRI 115
KGNN IP+ H K W VK +FNQPA++ RR++ R+
Sbjct: 14 KGNNAIPHVHQRKHWNPCSSQKGNVKVFFNQPAQKQRRRRLRL 56
>UniRef50_O15616 Cluster: 60S ribosomal protein L13; n=3; Entamoeba
histolytica|Rep: 60S ribosomal protein L13 - Entamoeba
histolytica
Length = 138
Score = 35.1 bits (77), Expect = 0.30
Identities = 14/27 (51%), Positives = 17/27 (62%)
Frame = +2
Query: 35 FHKDWQRFVKTWFNQPARRHRRKQNRI 115
F KDW+ V TW QP R+ RR Q R+
Sbjct: 12 FGKDWRSKVHTWVQQPFRKIRRHQTRV 38
>UniRef50_O59931 Cluster: 60S ribosomal protein L13; n=5;
Ascomycota|Rep: 60S ribosomal protein L13 - Candida
albicans (Yeast)
Length = 202
Score = 33.5 bits (73), Expect = 0.92
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = +2
Query: 26 NGHFHKDWQRFVKTWFNQPARRHRRKQNRI 115
N HF K WQ V+ F+Q ++ R+Q+R+
Sbjct: 11 NNHFRKHWQERVRVHFDQAGKKASRRQSRL 40
>UniRef50_A4SXJ1 Cluster: Polar amino acid ABC transporter, inner
membrane subunit; n=8; Burkholderiales|Rep: Polar amino
acid ABC transporter, inner membrane subunit -
Polynucleobacter sp. QLW-P1DMWA-1
Length = 260
Score = 32.7 bits (71), Expect = 1.6
Identities = 12/32 (37%), Positives = 24/32 (75%)
Frame = -2
Query: 103 LSTMTTSWLIKPCLHKSLPILMEMAIWYHIIP 8
L ++T+W+ L +++PIL+++ +WYH+IP
Sbjct: 79 LVRLSTTWVE---LFRNIPILVQVFLWYHVIP 107
>UniRef50_Q9AW85 Cluster: 60S ribosomal protein L13; n=1; Guillardia
theta|Rep: 60S ribosomal protein L13 - Guillardia theta
(Cryptomonas phi)
Length = 127
Score = 32.3 bits (70), Expect = 2.1
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = +2
Query: 29 GHFHKDWQRFVKTWFNQPARRHRRKQNR 112
GHF K W+ V T FNQP + +R++ R
Sbjct: 10 GHFRKKWKNLVITNFNQPILKIKRRKIR 37
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 137,971,303
Number of Sequences: 1657284
Number of extensions: 1727711
Number of successful extensions: 5302
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 5278
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5301
length of database: 575,637,011
effective HSP length: 31
effective length of database: 524,261,207
effective search space used: 9960962933
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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