Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0024_L02
(152 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC664.05 |rpl13||60S ribosomal protein L13|Schizosaccharomyces... 62 7e-12
SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-gluca... 25 1.8
SPBC16D10.05 |mok13||alpha-1,3-glucan synthase Mok13|Schizosacch... 24 3.1
SPBPB2B2.12c |||UDP-glucose 4-epimerase|Schizosaccharomyces pomb... 23 4.1
SPBC13E7.01 |cwf22|SPBC15D4.16|splicing factor Cwf22|Schizosacch... 23 4.1
SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2 |Schizosacch... 23 5.5
SPAC7D4.09c |||steroid dehydrogenase |Schizosaccharomyces pombe|... 23 7.2
SPCC1753.02c |git3||G-protein coupled receptor Git3|Schizosaccha... 23 7.2
SPCC330.03c |||NADPH-hemoprotein reductase|Schizosaccharomyces p... 22 9.5
SPCC297.06c ||SPCC737.01c|mitochondrial ribosomal protein subuni... 22 9.5
SPBP19A11.04c |mor2|cps12|morphogenesis protein Mor2|Schizosacch... 22 9.5
SPCC162.09c |hmg1||3-hydroxy-3-methylglutaryl-CoA reductase|Schi... 22 9.5
>SPAC664.05 |rpl13||60S ribosomal protein L13|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 208
Score = 62.5 bits (145), Expect = 7e-12
Identities = 23/31 (74%), Positives = 27/31 (87%)
Frame = +2
Query: 20 IPNGHFHKDWQRFVKTWFNQPARRHRRKQNR 112
+PN HFHKDWQR+VKTWFNQP R+ RR+Q R
Sbjct: 9 LPNAHFHKDWQRYVKTWFNQPGRKLRRRQAR 39
>SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-glucan
synthase Ags1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 2410
Score = 24.6 bits (51), Expect = 1.8
Identities = 10/36 (27%), Positives = 18/36 (50%)
Frame = -2
Query: 127 FSLFYSILLSTMTTSWLIKPCLHKSLPILMEMAIWY 20
FSL + + T W+ + CL + + + A+WY
Sbjct: 2094 FSLNFGEEGAVQTRIWVFRACLVQGVQQVWSAALWY 2129
>SPBC16D10.05 |mok13||alpha-1,3-glucan synthase
Mok13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2358
Score = 23.8 bits (49), Expect = 3.1
Identities = 8/36 (22%), Positives = 16/36 (44%)
Frame = -2
Query: 127 FSLFYSILLSTMTTSWLIKPCLHKSLPILMEMAIWY 20
FSL + SW+++ C+ + + +WY
Sbjct: 2040 FSLNFGDEAGAGVVSWIVRACIVQGFQQIWACCLWY 2075
>SPBPB2B2.12c |||UDP-glucose 4-epimerase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 713
Score = 23.4 bits (48), Expect = 4.1
Identities = 9/17 (52%), Positives = 11/17 (64%), Gaps = 4/17 (23%)
Frame = -3
Query: 60 TNLCQSLWKW----PFG 22
T+ C+ LWKW PFG
Sbjct: 331 TDACRDLWKWTIENPFG 347
>SPBC13E7.01 |cwf22|SPBC15D4.16|splicing factor
Cwf22|Schizosaccharomyces pombe|chr 2|||Manual
Length = 834
Score = 23.4 bits (48), Expect = 4.1
Identities = 9/26 (34%), Positives = 16/26 (61%)
Frame = -2
Query: 139 RSNSFSLFYSILLSTMTTSWLIKPCL 62
R + +LF++ LLST + W + C+
Sbjct: 500 RLRNIALFFANLLSTDSIGWEVYDCV 525
>SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2176
Score = 23.0 bits (47), Expect = 5.5
Identities = 11/38 (28%), Positives = 18/38 (47%)
Frame = -2
Query: 130 SFSLFYSILLSTMTTSWLIKPCLHKSLPILMEMAIWYH 17
S L IL++ T K L++ LP+ + +W H
Sbjct: 1731 SSELSQVILMTVTTKKEYYKKFLNEPLPMESHLQVWLH 1768
>SPAC7D4.09c |||steroid dehydrogenase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 274
Score = 22.6 bits (46), Expect = 7.2
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = -2
Query: 130 SFSLFYSILLSTMTTSWLIK 71
S +LF SIL + + SWL+K
Sbjct: 21 STTLFVSILKNAPSLSWLMK 40
>SPCC1753.02c |git3||G-protein coupled receptor
Git3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 466
Score = 22.6 bits (46), Expect = 7.2
Identities = 9/26 (34%), Positives = 15/26 (57%)
Frame = -2
Query: 118 FYSILLSTMTTSWLIKPCLHKSLPIL 41
F+ ++L MT W+ LH +L +L
Sbjct: 103 FFLLVLVRMTDYWIFINILHNALLVL 128
>SPCC330.03c |||NADPH-hemoprotein reductase|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 145
Score = 22.2 bits (45), Expect = 9.5
Identities = 9/24 (37%), Positives = 11/24 (45%)
Frame = +2
Query: 5 KGNNMIPNGHFHKDWQRFVKTWFN 76
K IP GH +DW V + N
Sbjct: 39 KNKYKIPPGHTQQDWDALVASGKN 62
>SPCC297.06c ||SPCC737.01c|mitochondrial ribosomal protein subunit
8|Schizosaccharomyces pombe|chr 3|||Manual
Length = 230
Score = 22.2 bits (45), Expect = 9.5
Identities = 7/11 (63%), Positives = 8/11 (72%)
Frame = +2
Query: 38 HKDWQRFVKTW 70
H W+RFVK W
Sbjct: 41 HDLWRRFVKRW 51
>SPBP19A11.04c |mor2|cps12|morphogenesis protein
Mor2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2196
Score = 22.2 bits (45), Expect = 9.5
Identities = 10/16 (62%), Positives = 11/16 (68%)
Frame = -2
Query: 151 SRRTRSNSFSLFYSIL 104
SRR NSF LF S+L
Sbjct: 1585 SRRLACNSFQLFRSLL 1600
>SPCC162.09c |hmg1||3-hydroxy-3-methylglutaryl-CoA
reductase|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1053
Score = 22.2 bits (45), Expect = 9.5
Identities = 9/18 (50%), Positives = 13/18 (72%)
Frame = -2
Query: 145 RTRSNSFSLFYSILLSTM 92
R + F LF+S+LLST+
Sbjct: 227 RRLGSKFWLFFSVLLSTL 244
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 577,323
Number of Sequences: 5004
Number of extensions: 7542
Number of successful extensions: 38
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 38
length of database: 2,362,478
effective HSP length: 31
effective length of database: 2,207,354
effective search space used: 41939726
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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