Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0024_L02
         (152 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0110 - 866728-866952,867035-867193,867315-867448,868225-86...    63   3e-11
03_05_0108 - 20887146-20887370,20887460-20887618,20887930-208880...    63   3e-11
09_02_0396 - 8540532-8540549,8540656-8542129,8542217-8543121           25   8.3  
08_02_0854 - 21905054-21906308,21906396-21907300                       25   8.3  
07_03_0966 - 23016581-23016772,23017242-23017427,23017537-230176...    25   8.3  
05_05_0042 - 21798255-21798871,21799400-21799777,21799861-218008...    25   8.3  
01_02_0057 - 10691403-10691420,10691525-10692998,10693086-10693990     25   8.3  

>06_01_0110 -
           866728-866952,867035-867193,867315-867448,868225-868333
          Length = 208

 Score = 63.3 bits (147), Expect = 3e-11
 Identities = 24/33 (72%), Positives = 28/33 (84%)
 Frame = +2

Query: 5   KGNNMIPNGHFHKDWQRFVKTWFNQPARRHRRK 103
           K NN+IPNGHF K WQ +VKTWFNQPAR+ RR+
Sbjct: 3   KHNNVIPNGHFKKHWQNYVKTWFNQPARKQRRR 35


>03_05_0108 -
           20887146-20887370,20887460-20887618,20887930-20888063,
           20888597-20888705
          Length = 208

 Score = 63.3 bits (147), Expect = 3e-11
 Identities = 24/33 (72%), Positives = 28/33 (84%)
 Frame = +2

Query: 5   KGNNMIPNGHFHKDWQRFVKTWFNQPARRHRRK 103
           K NN+IPNGHF K WQ +VKTWFNQPAR+ RR+
Sbjct: 3   KHNNVIPNGHFKKHWQNYVKTWFNQPARKQRRR 35


>09_02_0396 - 8540532-8540549,8540656-8542129,8542217-8543121
          Length = 798

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 7/12 (58%), Positives = 10/12 (83%)
 Frame = +2

Query: 44  DWQRFVKTWFNQ 79
           +W+ F KTWFN+
Sbjct: 86  EWRSFQKTWFNE 97


>08_02_0854 - 21905054-21906308,21906396-21907300
          Length = 719

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 7/12 (58%), Positives = 10/12 (83%)
 Frame = +2

Query: 44  DWQRFVKTWFNQ 79
           +W+ F KTWFN+
Sbjct: 86  EWRSFQKTWFNE 97


>07_03_0966 -
           23016581-23016772,23017242-23017427,23017537-23017653,
           23017930-23018084,23018785-23019039,23019226-23019304,
           23019503-23019714,23020644-23020698
          Length = 416

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 13/35 (37%), Positives = 17/35 (48%)
 Frame = -2

Query: 139 RSNSFSLFYSILLSTMTTSWLIKPCLHKSLPILME 35
           R++  S  Y  +L  M  SWL K CL    P+  E
Sbjct: 131 RTDLKSAPYDTILLKMRPSWLEKDCLEFGPPMYQE 165


>05_05_0042 -
           21798255-21798871,21799400-21799777,21799861-21800820,
           21800918-21800957,21801471-21801766,21802696-21802774,
           21803013-21803100,21803189-21803273,21803364-21803625,
           21803720-21805027,21806187-21806393,21807288-21807519,
           21808267-21808353,21808427-21808735,21808879-21808957,
           21809788-21809867,21809952-21810029,21810744-21810831,
           21811102-21811241,21811342-21811415,21812043-21812125,
           21812403-21812516,21813975-21814136,21814377-21814641
          Length = 2036

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = +2

Query: 11  NNMIPNGHFHKDWQRFVKTWFN 76
           NN++ + H H   + F+ TW N
Sbjct: 243 NNIVLSAHLHLQSEGFLSTWTN 264


>01_02_0057 - 10691403-10691420,10691525-10692998,10693086-10693990
          Length = 798

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 7/12 (58%), Positives = 10/12 (83%)
 Frame = +2

Query: 44  DWQRFVKTWFNQ 79
           +W+ F KTWFN+
Sbjct: 86  EWRSFQKTWFNE 97


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,699,635
Number of Sequences: 37544
Number of extensions: 47207
Number of successful extensions: 126
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 126
length of database: 14,793,348
effective HSP length: 31
effective length of database: 13,629,484
effective search space used: 258960196
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)