Samia BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0024_L02
         (152 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X77926-1|CAA54898.1|  218|Drosophila melanogaster BBC1 protein p...    72   1e-13
AE014134-1746|ABC65888.1|  218|Drosophila melanogaster CG4651-PB...    72   1e-13
AE014134-1745|AAF52842.1|  218|Drosophila melanogaster CG4651-PA...    72   1e-13
AE014296-884|AAN11612.1|  548|Drosophila melanogaster CG32246-PA...    27   4.7  
DQ162845-1|ABA42953.1| 1715|Drosophila melanogaster TRF2 protein.      26   8.2  
AE014298-2653|AAF48791.2| 1108|Drosophila melanogaster CG15373-P...    26   8.2  

>X77926-1|CAA54898.1|  218|Drosophila melanogaster BBC1 protein
           protein.
          Length = 218

 Score = 71.7 bits (168), Expect = 1e-13
 Identities = 29/38 (76%), Positives = 32/38 (84%)
 Frame = +2

Query: 2   GKGNNMIPNGHFHKDWQRFVKTWFNQPARRHRRKQNRI 115
           GKGNNMIPN H+HK WQR VKTWFNQPAR+ RR  NR+
Sbjct: 2   GKGNNMIPNQHYHKWWQRHVKTWFNQPARKVRRHANRV 39


>AE014134-1746|ABC65888.1|  218|Drosophila melanogaster CG4651-PB,
           isoform B protein.
          Length = 218

 Score = 71.7 bits (168), Expect = 1e-13
 Identities = 29/38 (76%), Positives = 32/38 (84%)
 Frame = +2

Query: 2   GKGNNMIPNGHFHKDWQRFVKTWFNQPARRHRRKQNRI 115
           GKGNNMIPN H+HK WQR VKTWFNQPAR+ RR  NR+
Sbjct: 2   GKGNNMIPNQHYHKWWQRHVKTWFNQPARKVRRHANRV 39


>AE014134-1745|AAF52842.1|  218|Drosophila melanogaster CG4651-PA,
           isoform A protein.
          Length = 218

 Score = 71.7 bits (168), Expect = 1e-13
 Identities = 29/38 (76%), Positives = 32/38 (84%)
 Frame = +2

Query: 2   GKGNNMIPNGHFHKDWQRFVKTWFNQPARRHRRKQNRI 115
           GKGNNMIPN H+HK WQR VKTWFNQPAR+ RR  NR+
Sbjct: 2   GKGNNMIPNQHYHKWWQRHVKTWFNQPARKVRRHANRV 39


>AE014296-884|AAN11612.1|  548|Drosophila melanogaster CG32246-PA
           protein.
          Length = 548

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = -2

Query: 121 LFYSILLSTMTTSWLIKPCLHKSLPILMEMAIWYHIIPF 5
           L  SIL  TMTTSWL    +  +    +    WY+++ F
Sbjct: 117 LIASILSITMTTSWLYASFVDLNNGNYLLGGSWYYLMTF 155


>DQ162845-1|ABA42953.1| 1715|Drosophila melanogaster TRF2 protein.
          Length = 1715

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = +2

Query: 32   HFHKDWQRFVKTWFNQPARRHRRKQNRI 115
            H  +  ++FV     Q   +HRR+QNR+
Sbjct: 994  HLFEQQKQFVLEKLRQQKEQHRRQQNRV 1021


>AE014298-2653|AAF48791.2| 1108|Drosophila melanogaster CG15373-PA
           protein.
          Length = 1108

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 9/32 (28%), Positives = 16/32 (50%)
 Frame = +2

Query: 14  NMIPNGHFHKDWQRFVKTWFNQPARRHRRKQN 109
           N +PN     D ++++  W    A+RH   +N
Sbjct: 79  NGLPNAASPSDLRKYIHQWHTDIAKRHLESRN 110


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,154,227
Number of Sequences: 53049
Number of extensions: 82961
Number of successful extensions: 299
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 297
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 299
length of database: 24,988,368
effective HSP length: 31
effective length of database: 23,343,849
effective search space used: 443533131
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)