Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0024_L02
         (152 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U88308-8|AAO61436.1|   88|Caenorhabditis elegans Ribosomal prote...    57   1e-09
U88308-7|AAB42322.1|  207|Caenorhabditis elegans Ribosomal prote...    57   1e-09
Z75532-6|CAA99813.2|  330|Caenorhabditis elegans Hypothetical pr...    28   1.0  
Z75530-9|CAA99797.2|  330|Caenorhabditis elegans Hypothetical pr...    28   1.0  
U00049-1|AAC47053.2|  288|Caenorhabditis elegans Serpentine rece...    25   9.6  

>U88308-8|AAO61436.1|   88|Caenorhabditis elegans Ribosomal protein,
           large subunitprotein 13, isoform b protein.
          Length = 88

 Score = 57.2 bits (132), Expect = 1e-09
 Identities = 21/36 (58%), Positives = 28/36 (77%)
 Frame = +2

Query: 5   KGNNMIPNGHFHKDWQRFVKTWFNQPARRHRRKQNR 112
           +GN M+ N HF K W + +KTWF+QPAR+ RR+QNR
Sbjct: 4   RGNQMLGNAHFRKHWHKRIKTWFDQPARKLRRRQNR 39


>U88308-7|AAB42322.1|  207|Caenorhabditis elegans Ribosomal protein,
           large subunitprotein 13, isoform a protein.
          Length = 207

 Score = 57.2 bits (132), Expect = 1e-09
 Identities = 21/36 (58%), Positives = 28/36 (77%)
 Frame = +2

Query: 5   KGNNMIPNGHFHKDWQRFVKTWFNQPARRHRRKQNR 112
           +GN M+ N HF K W + +KTWF+QPAR+ RR+QNR
Sbjct: 4   RGNQMLGNAHFRKHWHKRIKTWFDQPARKLRRRQNR 39


>Z75532-6|CAA99813.2|  330|Caenorhabditis elegans Hypothetical
           protein C47E8.2 protein.
          Length = 330

 Score = 27.9 bits (59), Expect = 1.0
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = -2

Query: 106 LLSTMTTSWLIKPCLHKSLPILMEMAIWYH 17
           LL+ +  SW + P +H +LPIL    I  H
Sbjct: 56  LLAELLNSWFLIPVVHVNLPILRFTGILSH 85


>Z75530-9|CAA99797.2|  330|Caenorhabditis elegans Hypothetical
           protein C47E8.2 protein.
          Length = 330

 Score = 27.9 bits (59), Expect = 1.0
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = -2

Query: 106 LLSTMTTSWLIKPCLHKSLPILMEMAIWYH 17
           LL+ +  SW + P +H +LPIL    I  H
Sbjct: 56  LLAELLNSWFLIPVVHVNLPILRFTGILSH 85


>U00049-1|AAC47053.2|  288|Caenorhabditis elegans Serpentine
           receptor, class g (gamma)protein 1 protein.
          Length = 288

 Score = 24.6 bits (51), Expect = 9.6
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -2

Query: 130 SFSLFYSILLSTMTTSWLIKPCL 62
           S+SLF+   L ++ T+  I PCL
Sbjct: 139 SYSLFWKKWLKSILTTMAISPCL 161


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,146,489
Number of Sequences: 27780
Number of extensions: 40992
Number of successful extensions: 128
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 128
length of database: 12,740,198
effective HSP length: 31
effective length of database: 11,879,018
effective search space used: 225701342
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)