Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0024_K24
(356 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0570 - 4205739-4205776,4205846-4205897,4205939-4206067,420... 66 8e-12
06_03_0492 - 21386587-21386700,21387471-21387599,21387715-213877... 64 4e-11
04_04_0193 + 23482177-23484963 28 2.5
06_01_0779 - 5823389-5823787 27 5.7
02_03_0109 - 15333228-15334793,15335255-15335392,15335496-153357... 27 5.7
10_08_0253 - 16196275-16196307,16196425-16196550,16196643-161967... 26 7.6
04_04_1271 - 32282865-32283167,32283429-32283561,32283683-322839... 26 7.6
>03_01_0570 -
4205739-4205776,4205846-4205897,4205939-4206067,
4206183-4206258,4206360-4206412,4206494-4206555,
4206624-4206734,4206813-4206979,4207089-4207268,
4207598-4207687,4207773-4207921,4208367-4208501,
4208575-4208630,4208790-4208823,4209409-4209519
Length = 480
Score = 66.1 bits (154), Expect = 8e-12
Identities = 41/122 (33%), Positives = 64/122 (52%), Gaps = 5/122 (4%)
Frame = +1
Query: 4 SAEVQYHALSLANN-GFKVNIITYVETTPLTEITENPNIQISKLHPLDYN---KGPQLLQ 171
S +QYH+LSLAN G +V+I+ + P + ENP+I I ++ + K L
Sbjct: 24 SPRMQYHSLSLANQAGMEVDIVANGGSDPHLLLRENPSIHIHEMKSVQLTGILKISGALT 83
Query: 172 YVAKTIWQSISLLLTL-FISGKCHYLLCQNPPAIPTLPICSVYCLVARVQLIIDWHNYGY 348
+ K Q I L+ L F + + QNPP++PTL + + + I+DWHN+GY
Sbjct: 84 LLLKAAIQFIILIWYLCFKIPRPDVFIVQNPPSVPTLAAVKLASWLRGAKFIVDWHNFGY 143
Query: 349 SL 354
+L
Sbjct: 144 TL 145
>06_03_0492 -
21386587-21386700,21387471-21387599,21387715-21387790,
21387898-21387950,21388034-21388095,21388164-21388274,
21388361-21388527,21388804-21388869,21389416-21389505,
21389592-21389740,21390182-21390316,21390399-21390454,
21390630-21390663,21391908-21392018
Length = 450
Score = 63.7 bits (148), Expect = 4e-11
Identities = 41/122 (33%), Positives = 64/122 (52%), Gaps = 5/122 (4%)
Frame = +1
Query: 4 SAEVQYHALSLANNG-FKVNIITYVETTPLTEITENPNIQISKLHPLDY---NKGPQLLQ 171
S +QYH+LSLAN G +V+I+ + P + ENP I I ++ + +K L
Sbjct: 24 SPRMQYHSLSLANQGGMEVDIVANGGSDPHLLLRENPLIHIHEMKSVQLTGISKISGALS 83
Query: 172 YVAKTIWQSISLLLTL-FISGKCHYLLCQNPPAIPTLPICSVYCLVARVQLIIDWHNYGY 348
+ K Q I L+ L F + + QNPP++PTL + + + I+DWHN+GY
Sbjct: 84 MLLKAAIQFIILIWYLCFKIPRPDVFIVQNPPSVPTLAAVKLASGLRGAKSIVDWHNFGY 143
Query: 349 SL 354
+L
Sbjct: 144 TL 145
>04_04_0193 + 23482177-23484963
Length = 928
Score = 27.9 bits (59), Expect = 2.5
Identities = 14/53 (26%), Positives = 31/53 (58%), Gaps = 2/53 (3%)
Frame = +1
Query: 88 LTEITENPNI--QISKLHPLDYNKGPQLLQYVAKTIWQSISLLLTLFISGKCH 240
L +++++P++ + LH D + P + Q+ ++W+ +S L + ISG C+
Sbjct: 677 LEKLSQSPHLAEHLRNLHVQDCSDLPSI-QFSPSSLWRHMSRLKGIIISGCCN 728
>06_01_0779 - 5823389-5823787
Length = 132
Score = 26.6 bits (56), Expect = 5.7
Identities = 10/24 (41%), Positives = 12/24 (50%)
Frame = -3
Query: 300 AIHTAYG*CWNGWWVLTQQIMAFS 229
A TA CW WW++T M S
Sbjct: 72 ATTTASRCCWTSWWIVTAPRMMLS 95
>02_03_0109 -
15333228-15334793,15335255-15335392,15335496-15335771,
15336357-15336422,15338140-15338487
Length = 797
Score = 26.6 bits (56), Expect = 5.7
Identities = 9/15 (60%), Positives = 11/15 (73%)
Frame = +1
Query: 235 CHYLLCQNPPAIPTL 279
CH +LCQNP A+ L
Sbjct: 349 CHAILCQNPNAVSVL 363
>10_08_0253 - 16196275-16196307,16196425-16196550,16196643-16196741,
16196822-16197001,16197090-16197371,16197471-16199141,
16199257-16199463,16199566-16199700,16199792-16200082,
16200403-16200621,16200876-16201034,16201120-16201181,
16201257-16201383,16201460-16201693,16201777-16202003,
16202163-16202257,16202341-16202468,16202574-16202594,
16202765-16202921,16203007-16203075,16203228-16203341,
16203415-16203491,16203576-16203688,16204432-16204507,
16204592-16204756,16204825-16204952,16205049-16205130,
16205426-16205548,16205633-16205860,16205933-16206034,
16206144-16206341,16206581-16206760,16206868-16207020,
16207690-16207797,16208201-16208355,16208786-16208912,
16209825-16209914,16209986-16210127,16210303-16210379,
16210467-16210582,16210638-16210773,16211130-16211198,
16211279-16211361,16211655-16211720,16211788-16211974,
16212054-16213547,16213635-16214165,16214234-16214363,
16214407-16215878,16216359-16216364,16216750-16217055,
16217364-16217468,16217577-16217772,16217862-16217929,
16218853-16220631,16221026-16221151,16221604-16221780,
16221997-16222128,16223461-16223498,16223710-16223788,
16224175-16224284,16224787-16224935,16225027-16225197,
16225281-16225552,16226355-16226442,16227942-16228369
Length = 5157
Score = 26.2 bits (55), Expect = 7.6
Identities = 13/50 (26%), Positives = 25/50 (50%), Gaps = 3/50 (6%)
Frame = +1
Query: 64 ITYVETTPLTEITENPNIQI---SKLHPLDYNKGPQLLQYVAKTIWQSIS 204
+T+ ET L +T+ I L +DY K +L+ ++ +W+ +S
Sbjct: 2843 VTHDETCDLAHLTKMDAIDTILQEDLRVMDYQKNRLVLRISSRNLWEGVS 2892
>04_04_1271 -
32282865-32283167,32283429-32283561,32283683-32283908,
32284058-32284274,32284398-32284558,32285309-32285449,
32285621-32286944
Length = 834
Score = 26.2 bits (55), Expect = 7.6
Identities = 15/53 (28%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Frame = +3
Query: 96 NNRKPQYSNFKTASIRLQQRPSITSICSENYMA-KHKFAFNLIYKWKMPLFAV 251
+NR+P+ ++F TA + + + T + S Y+A ++ NL K + F V
Sbjct: 662 DNRRPKVADFGTAKLFINDQTDPTLVLSAGYIAPEYAAQGNLTLKCDVYSFGV 714
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,586,223
Number of Sequences: 37544
Number of extensions: 178844
Number of successful extensions: 421
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 414
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 418
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 542368620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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