Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0024_K23
         (321 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0202 - 1638978-1639571                                           50   4e-07
02_01_0158 - 1103461-1104186                                           48   1e-06
05_03_0031 - 7534327-7534480,7535546-7535649,7535724-7535793,753...    30   0.47 
10_08_0021 + 14217455-14217505,14217742-14217909,14219137-142193...    28   1.4  
01_05_0718 - 24575946-24576121,24576721-24576874,24576964-245770...    28   1.4  
09_02_0515 + 10121849-10122149,10132151-10132187,10132314-101327...    27   3.3  
09_02_0161 + 5121977-5122318,5123883-5124007,5124815-5125112           27   4.3  
01_06_0147 + 26997641-26997688,26997783-26997857,26997966-269980...    26   5.7  

>08_01_0202 - 1638978-1639571
          Length = 197

 Score = 50.0 bits (114), Expect = 4e-07
 Identities = 19/36 (52%), Positives = 28/36 (77%)
 Frame = +3

Query: 177 AEKVSGTVKWFNVKSGYGFINRNDTKEDVFVHQTAI 284
           +E+V GTVKWF+   G+GFI  +D  ED+FVHQ+++
Sbjct: 3   SERVKGTVKWFDATKGFGFITPDDGGEDLFVHQSSL 38


>02_01_0158 - 1103461-1104186
          Length = 241

 Score = 48.4 bits (110), Expect = 1e-06
 Identities = 20/36 (55%), Positives = 27/36 (75%)
 Frame = +3

Query: 177 AEKVSGTVKWFNVKSGYGFINRNDTKEDVFVHQTAI 284
           A +  GTVKWFN   G+GFI+ +D  ED+FVHQ++I
Sbjct: 4   AARHRGTVKWFNDTKGFGFISPDDGSEDLFVHQSSI 39


>05_03_0031 - 7534327-7534480,7535546-7535649,7535724-7535793,
            7535889-7535932,7536042-7536146,7536223-7536344,
            7536807-7536894,7536966-7537052,7537718-7537786,
            7537859-7538188,7539777-7539824,7540003-7540069,
            7540150-7540208,7541220-7541453,7541536-7541601,
            7541684-7541883,7542104-7542197,7542295-7542414,
            7542596-7542703,7542808-7542871,7543378-7543409,
            7546049-7548007
          Length = 1407

 Score = 29.9 bits (64), Expect = 0.47
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = -1

Query: 297  GCFGLSQFDVQTHLLWCHS 241
            GC+GL QF ++  LL CHS
Sbjct: 1107 GCYGLPQFRMRVFLLGCHS 1125


>10_08_0021 +
           14217455-14217505,14217742-14217909,14219137-14219340,
           14219429-14219601,14219970-14220066,14220183-14220336,
           14222029-14222209,14222858-14222898,14223146-14223231,
           14223282-14223389,14223538-14223579
          Length = 434

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = -2

Query: 308 SLARVVSDYRSLMYKHIFFGVIPIDETISTL 216
           SL R+  DY  L Y+H     +PI+ET+  L
Sbjct: 115 SLERLAVDYIDLYYQHRIDQSVPIEETMGEL 145


>01_05_0718 -
           24575946-24576121,24576721-24576874,24576964-24577060,
           24577142-24577314,24577426-24577629,24577725-24577892,
           24577938-24578084
          Length = 372

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 14/31 (45%), Positives = 18/31 (58%)
 Frame = -2

Query: 308 SLARVVSDYRSLMYKHIFFGVIPIDETISTL 216
           SL R+  DY  L Y+H     IPI++TI  L
Sbjct: 147 SLGRLGVDYIDLYYQHRVDTTIPIEDTIGEL 177


>09_02_0515 +
           10121849-10122149,10132151-10132187,10132314-10132790,
           10133184-10133733
          Length = 454

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = +3

Query: 186 VSGTVKWFNVKSGYGFINRNDTKE 257
           V+  VKW  +KSG  F   N  KE
Sbjct: 195 VAAAVKWLKIKSGQAFAVENYVKE 218


>09_02_0161 + 5121977-5122318,5123883-5124007,5124815-5125112
          Length = 254

 Score = 26.6 bits (56), Expect = 4.3
 Identities = 13/44 (29%), Positives = 22/44 (50%)
 Frame = +3

Query: 171 VIAEKVSGTVKWFNVKSGYGFINRNDTKEDVFVHQTAIIRNNPR 302
           +++E+V GTVKWF+  +           E+  V  T ++R   R
Sbjct: 1   MVSERVKGTVKWFDATAAME-ATAATAGEEAAVCATCVVRRATR 43


>01_06_0147 +
           26997641-26997688,26997783-26997857,26997966-26998052,
           26998566-26998622,26998867-26998959,26999528-26999600,
           26999830-26999905,27000217-27000280,27000951-27000980,
           27001251-27001367,27002742-27002782,27002870-27003176,
           27003279-27003368,27003479-27003541,27003678-27003752,
           27003922-27003984,27004714-27004784,27004885-27005068
          Length = 537

 Score = 26.2 bits (55), Expect = 5.7
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = +1

Query: 34  GFYHLSHHRRSPITSWL 84
           G Y + HH  SPI SW+
Sbjct: 300 GSYSVKHHYPSPIVSWI 316


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,843,773
Number of Sequences: 37544
Number of extensions: 88361
Number of successful extensions: 277
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 275
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 277
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 411066120
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)