Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0024_K23
(321 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY061440-1|AAL28988.1| 352|Drosophila melanogaster LD37574p pro... 98 2e-21
AE014296-2093|AAF49961.3| 352|Drosophila melanogaster CG5654-PA... 98 2e-21
U49120-1|AAB94634.1| 359|Drosophila melanogaster Y-box protein ... 92 2e-19
AY118360-1|AAM48389.1| 195|Drosophila melanogaster RE05342p pro... 44 4e-05
AF521096-1|AAM77748.1| 195|Drosophila melanogaster RNA-binding ... 44 4e-05
AE014296-983|AAF50758.2| 195|Drosophila melanogaster CG17334-PA... 44 4e-05
AY060441-1|AAL25480.1| 143|Drosophila melanogaster LD47312p pro... 32 0.14
AE014296-2798|AAN11740.1| 143|Drosophila melanogaster CG9705-PB... 32 0.14
AE014296-2797|AAF49414.1| 143|Drosophila melanogaster CG9705-PA... 32 0.14
AE013599-3457|AAF46894.2| 1227|Drosophila melanogaster CG30268-P... 30 0.58
BT029686-1|ABL75743.1| 394|Drosophila melanogaster IP17383p pro... 27 5.4
AY160083-1|AAN77520.1| 1910|Drosophila melanogaster alpha1U prot... 27 5.4
AE014298-2026|AAF48365.2| 2196|Drosophila melanogaster CG1517-PB... 27 5.4
>AY061440-1|AAL28988.1| 352|Drosophila melanogaster LD37574p
protein.
Length = 352
Score = 98.3 bits (234), Expect = 2e-21
Identities = 44/50 (88%), Positives = 48/50 (96%)
Frame = +3
Query: 171 VIAEKVSGTVKWFNVKSGYGFINRNDTKEDVFVHQTAIIRNNPRKAVRSV 320
VIA KV+GTVKWFNVKSGYGFINRNDT+EDVFVHQ+AI RNNP+KAVRSV
Sbjct: 57 VIATKVTGTVKWFNVKSGYGFINRNDTREDVFVHQSAIARNNPKKAVRSV 106
>AE014296-2093|AAF49961.3| 352|Drosophila melanogaster CG5654-PA
protein.
Length = 352
Score = 98.3 bits (234), Expect = 2e-21
Identities = 44/50 (88%), Positives = 48/50 (96%)
Frame = +3
Query: 171 VIAEKVSGTVKWFNVKSGYGFINRNDTKEDVFVHQTAIIRNNPRKAVRSV 320
VIA KV+GTVKWFNVKSGYGFINRNDT+EDVFVHQ+AI RNNP+KAVRSV
Sbjct: 57 VIATKVTGTVKWFNVKSGYGFINRNDTREDVFVHQSAIARNNPKKAVRSV 106
>U49120-1|AAB94634.1| 359|Drosophila melanogaster Y-box protein
protein.
Length = 359
Score = 91.9 bits (218), Expect = 2e-19
Identities = 43/50 (86%), Positives = 47/50 (94%)
Frame = +3
Query: 171 VIAEKVSGTVKWFNVKSGYGFINRNDTKEDVFVHQTAIIRNNPRKAVRSV 320
VIA KV+GTVKWFNVKSGYGFINRNDT+EDVFVHQ+A I NNP+KAVRSV
Sbjct: 58 VIATKVTGTVKWFNVKSGYGFINRNDTREDVFVHQSA-IANNPKKAVRSV 106
>AY118360-1|AAM48389.1| 195|Drosophila melanogaster RE05342p
protein.
Length = 195
Score = 44.0 bits (99), Expect = 4e-05
Identities = 17/31 (54%), Positives = 22/31 (70%)
Frame = +3
Query: 192 GTVKWFNVKSGYGFINRNDTKEDVFVHQTAI 284
G KWFNV G+GF+ ND ++VFVHQ+ I
Sbjct: 41 GKCKWFNVAKGWGFLTPNDGGQEVFVHQSVI 71
>AF521096-1|AAM77748.1| 195|Drosophila melanogaster RNA-binding
protein LIN-28 protein.
Length = 195
Score = 44.0 bits (99), Expect = 4e-05
Identities = 17/31 (54%), Positives = 22/31 (70%)
Frame = +3
Query: 192 GTVKWFNVKSGYGFINRNDTKEDVFVHQTAI 284
G KWFNV G+GF+ ND ++VFVHQ+ I
Sbjct: 41 GKCKWFNVAKGWGFLTPNDGGQEVFVHQSVI 71
>AE014296-983|AAF50758.2| 195|Drosophila melanogaster CG17334-PA
protein.
Length = 195
Score = 44.0 bits (99), Expect = 4e-05
Identities = 17/31 (54%), Positives = 22/31 (70%)
Frame = +3
Query: 192 GTVKWFNVKSGYGFINRNDTKEDVFVHQTAI 284
G KWFNV G+GF+ ND ++VFVHQ+ I
Sbjct: 41 GKCKWFNVAKGWGFLTPNDGGQEVFVHQSVI 71
>AY060441-1|AAL25480.1| 143|Drosophila melanogaster LD47312p
protein.
Length = 143
Score = 32.3 bits (70), Expect = 0.14
Identities = 16/33 (48%), Positives = 20/33 (60%)
Frame = +3
Query: 186 VSGTVKWFNVKSGYGFINRNDTKEDVFVHQTAI 284
V+G VK F+ G+GFI N EDVF H + I
Sbjct: 55 VTGMVKSFSRTKGHGFITPNAGGEDVFCHVSDI 87
>AE014296-2798|AAN11740.1| 143|Drosophila melanogaster CG9705-PB,
isoform B protein.
Length = 143
Score = 32.3 bits (70), Expect = 0.14
Identities = 16/33 (48%), Positives = 20/33 (60%)
Frame = +3
Query: 186 VSGTVKWFNVKSGYGFINRNDTKEDVFVHQTAI 284
V+G VK F+ G+GFI N EDVF H + I
Sbjct: 55 VTGMVKSFSRTKGHGFITPNAGGEDVFCHVSDI 87
>AE014296-2797|AAF49414.1| 143|Drosophila melanogaster CG9705-PA,
isoform A protein.
Length = 143
Score = 32.3 bits (70), Expect = 0.14
Identities = 16/33 (48%), Positives = 20/33 (60%)
Frame = +3
Query: 186 VSGTVKWFNVKSGYGFINRNDTKEDVFVHQTAI 284
V+G VK F+ G+GFI N EDVF H + I
Sbjct: 55 VTGMVKSFSRTKGHGFITPNAGGEDVFCHVSDI 87
>AE013599-3457|AAF46894.2| 1227|Drosophila melanogaster CG30268-PA
protein.
Length = 1227
Score = 30.3 bits (65), Expect = 0.58
Identities = 14/38 (36%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Frame = -2
Query: 287 DYRSLMYKHIFFGV-IPIDETISTLDVEPFDSTRNLFS 177
+YR L Y H F G+ +P D + + +EP +NLF+
Sbjct: 599 NYRELYYIHFFSGISLPNDLMYNMMPIEPRRMKKNLFN 636
>BT029686-1|ABL75743.1| 394|Drosophila melanogaster IP17383p
protein.
Length = 394
Score = 27.1 bits (57), Expect = 5.4
Identities = 9/17 (52%), Positives = 14/17 (82%)
Frame = -3
Query: 223 PLLTLNHLTVPETFSAM 173
P+LT+N L +P+TF +M
Sbjct: 91 PILTINSLAIPDTFCSM 107
>AY160083-1|AAN77520.1| 1910|Drosophila melanogaster alpha1U protein
protein.
Length = 1910
Score = 27.1 bits (57), Expect = 5.4
Identities = 9/17 (52%), Positives = 14/17 (82%)
Frame = -3
Query: 223 PLLTLNHLTVPETFSAM 173
P+LT+N L +P+TF +M
Sbjct: 217 PILTINSLAIPDTFCSM 233
>AE014298-2026|AAF48365.2| 2196|Drosophila melanogaster CG1517-PB,
isoform B protein.
Length = 2196
Score = 27.1 bits (57), Expect = 5.4
Identities = 9/17 (52%), Positives = 14/17 (82%)
Frame = -3
Query: 223 PLLTLNHLTVPETFSAM 173
P+LT+N L +P+TF +M
Sbjct: 503 PILTINSLAIPDTFCSM 519
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,481,746
Number of Sequences: 53049
Number of extensions: 155375
Number of successful extensions: 365
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 354
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 364
length of database: 24,988,368
effective HSP length: 74
effective length of database: 21,062,742
effective search space used: 674007744
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -