Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0024_K22
         (123 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_07_0228 - 28526885-28527046,28527151-28527241,28528315-285284...    28   1.2  
11_01_0716 + 5900598-5901167                                           25   8.6  
11_01_0715 + 5884867-5885154,5896513-5896704                           25   8.6  

>05_07_0228 -
           28526885-28527046,28527151-28527241,28528315-28528455,
           28528560-28528625,28529180-28529317,28529759-28529860,
           28530156-28530236,28530314-28530383,28530598-28530674,
           28531035-28531483
          Length = 458

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 13/29 (44%), Positives = 19/29 (65%)
 Frame = -1

Query: 111 IYAITLARGYVXVSNYIYFLSQGLLKKII 25
           IYAI L  G++ V  Y YF S+ +L+ +I
Sbjct: 164 IYAILLMPGFIRV-GYYYFFSRQVLRSVI 191


>11_01_0716 + 5900598-5901167
          Length = 189

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = -1

Query: 96  LARGYVXVSNYIYFLSQGLLKKI 28
           LARGY+   NY Y L+ G + +I
Sbjct: 161 LARGYMVTKNYDYSLATGGIVEI 183


>11_01_0715 + 5884867-5885154,5896513-5896704
          Length = 159

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 12/26 (46%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
 Frame = -1

Query: 96  LARGYVXVSNYIYFLSQGLLKKI-IC 22
           LARGY+   NY Y L+ G + +I +C
Sbjct: 131 LARGYMVTKNYDYSLATGGVVQIDVC 156


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,697,112
Number of Sequences: 37544
Number of extensions: 26927
Number of successful extensions: 43
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 43
length of database: 14,793,348
effective HSP length: 21
effective length of database: 14,004,924
effective search space used: 266093556
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)