Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0024_K21
(367 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC895.06 |||RNA polymerase II elongator complex subunit Elp2 |... 28 0.39
SPAC6F12.10c |ade3|min11|phosphoribosylformylglycinamidine synth... 28 0.52
SPAPB17E12.02 |yip12|yip1, yip1-b|SMN family protein Yip12|Schiz... 27 0.69
SPAC19B12.12c |yip11|yip1, yip1-a|SMN family protein Yip11|Schiz... 27 0.69
SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11 |Schizosacc... 26 1.6
SPAC1527.03 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 26 2.1
SPAC22F3.13 |tsc1||hamartin|Schizosaccharomyces pombe|chr 1|||Ma... 25 2.8
SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual 25 2.8
SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase Rqh1|... 25 3.7
SPBC16H5.09c |||alpha-1,2-mannosyltransferase |Schizosaccharomyc... 25 4.9
SPAC11G7.03 |idh1|glu3|isocitrate dehydrogenase |Schizosaccharom... 24 6.4
SPAC1F12.05 |||conserved fungal protein|Schizosaccharomyces pomb... 24 6.4
SPBC691.05c ||SPBP22H7.01c|membrane transporter |Schizosaccharom... 24 6.4
SPBC839.08c |its8||pig-N |Schizosaccharomyces pombe|chr 2|||Manual 24 6.4
>SPCC895.06 |||RNA polymerase II elongator complex subunit Elp2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 760
Score = 28.3 bits (60), Expect = 0.39
Identities = 19/50 (38%), Positives = 24/50 (48%)
Frame = -3
Query: 290 GNSAGISCTEATRSIGGIFR*SCRRWPAHPNRVLAGVSRTHTTVKFSCDN 141
GN A SC T I + W + +VL G S T TT+KFS D+
Sbjct: 543 GNIAATSCKSQTPEHAVIRLYETQSW--NQQQVLKGHSLTVTTIKFSPDD 590
>SPAC6F12.10c |ade3|min11|phosphoribosylformylglycinamidine synthase
Ade3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1323
Score = 27.9 bits (59), Expect = 0.52
Identities = 25/66 (37%), Positives = 34/66 (51%), Gaps = 8/66 (12%)
Frame = -1
Query: 271 PALKRRDQLEEY---SVDPVADG--RLI--PIVFSRVFLALIQQ*SFH-VITRDRIPGQV 116
P K L+ Y S DP+ D R++ P V S+ FL I S +I RD++ G
Sbjct: 627 PLSKFDSSLKSYLAPSSDPILDAVERVLRMPAVASKSFLITIGDRSVTGLIARDQMVGPW 686
Query: 115 QVPVSD 98
QVPV+D
Sbjct: 687 QVPVAD 692
>SPAPB17E12.02 |yip12|yip1, yip1-b|SMN family protein
Yip12|Schizosaccharomyces pombe|chr 1|||Manual
Length = 235
Score = 27.5 bits (58), Expect = 0.69
Identities = 14/53 (26%), Positives = 24/53 (45%)
Frame = +2
Query: 11 SCWVLSFFEAENRLLQGGCRRKCLSILKTIRDRHLDLPGNPVTCYHMKTLLLY 169
S W+ F LL G S+LK++R H P ++ ++ +L+Y
Sbjct: 173 SQWIFCFCYKLPELLNGEDISTLRSVLKSLRSTHTSFPALQMSASALQAVLVY 225
>SPAC19B12.12c |yip11|yip1, yip1-a|SMN family protein
Yip11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 235
Score = 27.5 bits (58), Expect = 0.69
Identities = 14/53 (26%), Positives = 24/53 (45%)
Frame = +2
Query: 11 SCWVLSFFEAENRLLQGGCRRKCLSILKTIRDRHLDLPGNPVTCYHMKTLLLY 169
S W+ F LL G S+LK++R H P ++ ++ +L+Y
Sbjct: 173 SQWIFCFCYKLPELLNGEDISTLRSVLKSLRSTHTSFPALQMSASALQAVLVY 225
>SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1284
Score = 26.2 bits (55), Expect = 1.6
Identities = 16/50 (32%), Positives = 24/50 (48%)
Frame = +2
Query: 11 SCWVLSFFEAENRLLQGGCRRKCLSILKTIRDRHLDLPGNPVTCYHMKTL 160
+C V S E+ L++ + +S T DRH LP N + Y+ K L
Sbjct: 683 NCHVPSNLSTESLLIKFYTNQNKISADVTASDRHFLLPSNRLYTYNDKQL 732
>SPAC1527.03 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 475
Score = 25.8 bits (54), Expect = 2.1
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = +1
Query: 73 EMPQYFEDYPRQAPGPARESGHVLSHE 153
E+PQ ED QAP + SGH S +
Sbjct: 235 EVPQTSEDSSSQAPHHSSSSGHAPSQQ 261
>SPAC22F3.13 |tsc1||hamartin|Schizosaccharomyces pombe|chr
1|||Manual
Length = 899
Score = 25.4 bits (53), Expect = 2.8
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = +1
Query: 49 PPAGRLPAEMPQYFEDYPRQAPGPARESGHVL 144
P L AE+ Y + YP+Q P +++ H+L
Sbjct: 23 PDLTELIAEVESYQQRYPKQNPTNSQKIRHIL 54
>SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1496
Score = 25.4 bits (53), Expect = 2.8
Identities = 8/15 (53%), Positives = 11/15 (73%)
Frame = +2
Query: 110 HLDLPGNPVTCYHMK 154
H DL NP +CYH++
Sbjct: 1258 HYDLLHNPASCYHIR 1272
>SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase
Rqh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1328
Score = 25.0 bits (52), Expect = 3.7
Identities = 12/39 (30%), Positives = 21/39 (53%)
Frame = +2
Query: 74 KCLSILKTIRDRHLDLPGNPVTCYHMKTLLLYECEKHPR 190
+CL LK +R + + + V+ Y ++LL +K PR
Sbjct: 1120 RCLKDLKLLRSNLMAIDDSRVSSYFTDSVLLSMAKKLPR 1158
>SPBC16H5.09c |||alpha-1,2-mannosyltransferase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 372
Score = 24.6 bits (51), Expect = 4.9
Identities = 14/44 (31%), Positives = 20/44 (45%)
Frame = -2
Query: 339 FYSAVGDFPLNRSTCGRK*CGHLLH*SDEINWRNIPLILSPMAG 208
FY GD P++ + LH DEI + + PL+ P G
Sbjct: 297 FYERWGDAPVHSIALSLFLDRNKLHYFDEIGYSHAPLLHCPRKG 340
>SPAC11G7.03 |idh1|glu3|isocitrate dehydrogenase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 356
Score = 24.2 bits (50), Expect = 6.4
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = +1
Query: 283 LFPTARRPVQGEIADCTIERRENKSGG 363
+F TA P++ E D T + NKS G
Sbjct: 42 IFKTANVPIEFEEIDVTGMEKNNKSSG 68
>SPAC1F12.05 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 377
Score = 24.2 bits (50), Expect = 6.4
Identities = 10/31 (32%), Positives = 18/31 (58%)
Frame = +1
Query: 229 QRNIPPIDLVASVQEMPALFPTARRPVQGEI 321
QR PP L+A ++ P + P + PV+ ++
Sbjct: 166 QRLFPPTSLIALLELPPVIHPLSCVPVEFQL 196
>SPBC691.05c ||SPBP22H7.01c|membrane transporter
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 668
Score = 24.2 bits (50), Expect = 6.4
Identities = 9/26 (34%), Positives = 16/26 (61%)
Frame = +1
Query: 118 PARESGHVLSHENFTVV*VRETPART 195
PA+E H+L+ +F++ V + P T
Sbjct: 620 PAKERQHLLAERSFSIPPVADVPTST 645
>SPBC839.08c |its8||pig-N |Schizosaccharomyces pombe|chr 2|||Manual
Length = 935
Score = 24.2 bits (50), Expect = 6.4
Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 3/35 (8%)
Frame = +2
Query: 233 GIFLQ--LISSLQCRRCPHYFLPHVD-LFKGKSPT 328
G+F+ +I S R C HYFL + LF SPT
Sbjct: 701 GLFITSYIIPSHHIRSCKHYFLDRLAILFLTFSPT 735
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,575,854
Number of Sequences: 5004
Number of extensions: 30800
Number of successful extensions: 92
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 89
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 92
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 114084208
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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