Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0024_K21
(367 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_0347 + 24564589-24565296 34 0.030
10_08_0956 + 21796707-21797497,21799603-21799861,21799969-21800142 32 0.12
08_02_0828 - 21596570-21597337 29 1.5
11_06_0715 + 26552962-26553510,26553578-26555746 28 2.0
07_03_1143 - 24294516-24294528,24294656-24297926,24298011-24298056 28 2.0
08_02_0830 - 21617485-21618198 28 2.6
07_01_0004 + 35300-35533,35617-35732,39044-39287,39451-40578,406... 28 2.6
04_03_0719 + 19006730-19007440 27 6.0
01_06_0956 - 33343503-33344086,33344225-33344384 27 6.0
08_02_1185 + 25016146-25016422,25017201-25017443,25017551-250176... 26 7.9
07_03_1218 + 24955627-24955631,24955883-24955937,24956015-249561... 26 7.9
05_04_0260 + 19501643-19503010 26 7.9
03_05_0333 + 23245139-23245224,23245527-23245633,23246372-23247282 26 7.9
>04_04_0347 + 24564589-24565296
Length = 235
Score = 34.3 bits (75), Expect = 0.030
Identities = 14/29 (48%), Positives = 18/29 (62%)
Frame = +1
Query: 46 SPPAGRLPAEMPQYFEDYPRQAPGPARES 132
SPP+ A+ P Y+ YP AP PA+ES
Sbjct: 184 SPPSADEGAQAPSYYGHYPSPAPAPAQES 212
>10_08_0956 + 21796707-21797497,21799603-21799861,21799969-21800142
Length = 407
Score = 32.3 bits (70), Expect = 0.12
Identities = 19/77 (24%), Positives = 35/77 (45%)
Frame = +2
Query: 2 HEASCWVLSFFEAENRLLQGGCRRKCLSILKTIRDRHLDLPGNPVTCYHMKTLLLYECEK 181
HE L + N Q G + +L T+ +++ +PG+P+ H K L + +
Sbjct: 297 HEGRRQGLGMYTFRNGETQAGHWQN--GVLDTLSTQNI-IPGSPIAVNHSKVLNAVQEAR 353
Query: 182 HPREHDWDEPAIGDRIN 232
E +D P + D++N
Sbjct: 354 RAAERAYDVPRVDDKVN 370
>08_02_0828 - 21596570-21597337
Length = 255
Score = 28.7 bits (61), Expect = 1.5
Identities = 14/47 (29%), Positives = 23/47 (48%)
Frame = -3
Query: 302 RRAVGNSAGISCTEATRSIGGIFR*SCRRWPAHPNRVLAGVSRTHTT 162
R+ G SA S + ++ S +C RW AH N+ G + + +T
Sbjct: 68 RKKAGGSAASSSSSSSGSAIPCRADACERWDAHKNKKAGGSAASSST 114
>11_06_0715 + 26552962-26553510,26553578-26555746
Length = 905
Score = 28.3 bits (60), Expect = 2.0
Identities = 10/13 (76%), Positives = 10/13 (76%)
Frame = -2
Query: 195 CSRGCFSHSYNSK 157
C R CF HSYNSK
Sbjct: 496 CRRECFGHSYNSK 508
>07_03_1143 - 24294516-24294528,24294656-24297926,24298011-24298056
Length = 1109
Score = 28.3 bits (60), Expect = 2.0
Identities = 13/24 (54%), Positives = 14/24 (58%)
Frame = -2
Query: 222 SPMAGSSQSCSRGCFSHSYNSKVF 151
SP +G S SC GC S S KVF
Sbjct: 780 SPPSGCSSSCVTGCSSSSEGVKVF 803
>08_02_0830 - 21617485-21618198
Length = 237
Score = 27.9 bits (59), Expect = 2.6
Identities = 14/40 (35%), Positives = 20/40 (50%)
Frame = -3
Query: 302 RRAVGNSAGISCTEATRSIGGIFR*SCRRWPAHPNRVLAG 183
R+ G+SA S + ++ S SC RW AH N+ G
Sbjct: 68 RKEAGSSAASSSSSSSSSGLPCRADSCERWDAHKNKKAGG 107
>07_01_0004 +
35300-35533,35617-35732,39044-39287,39451-40578,
40657-40833
Length = 632
Score = 27.9 bits (59), Expect = 2.6
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = +1
Query: 211 GHRRQDQRNIPPIDLVASVQEMPALFPTA 297
G ++ N PP+DL S +P+LFP A
Sbjct: 349 GDCSENSANSPPLDLPLSFPLLPSLFPLA 377
>04_03_0719 + 19006730-19007440
Length = 236
Score = 26.6 bits (56), Expect = 6.0
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = +3
Query: 288 SYRTSTCSRGNRRLHYRTPR 347
+Y+TS CS +RR H+R R
Sbjct: 45 AYKTSRCSGASRRRHHRRSR 64
>01_06_0956 - 33343503-33344086,33344225-33344384
Length = 247
Score = 26.6 bits (56), Expect = 6.0
Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 3/41 (7%)
Frame = +1
Query: 184 PARTRLG*AGHRRQDQRNIPPID---LVASVQEMPALFPTA 297
PA T+ +GH++ R++PP + +VQ + A FP A
Sbjct: 164 PAATQRRHSGHKKHRSRHLPPKPAPAMAPTVQSVEADFPAA 204
>08_02_1185 +
25016146-25016422,25017201-25017443,25017551-25017672,
25017760-25017800,25017904-25018002,25018476-25018692
Length = 332
Score = 26.2 bits (55), Expect = 7.9
Identities = 15/37 (40%), Positives = 19/37 (51%)
Frame = -2
Query: 204 SQSCSRGCFSHSYNSKVFM**HVTGFPGRSRCLSRIV 94
S S S S ++ +V+ VTG PG RCL R V
Sbjct: 150 SISNSAASTSSTHGKEVYTDYSVTGIPGDGRCLFRSV 186
>07_03_1218 +
24955627-24955631,24955883-24955937,24956015-24956131,
24957142-24957306,24957703-24957958,24957987-24958051
Length = 220
Score = 26.2 bits (55), Expect = 7.9
Identities = 12/28 (42%), Positives = 13/28 (46%)
Frame = -2
Query: 246 WRNIPLILSPMAGSSQSCSRGCFSHSYN 163
WR I L L A QSC+ C S N
Sbjct: 171 WRTIQLFLDQYAPEVQSCNTSCKSEIAN 198
>05_04_0260 + 19501643-19503010
Length = 455
Score = 26.2 bits (55), Expect = 7.9
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = +3
Query: 15 AGCLVSLRLRIASCRAAAGGNAS 83
+G L+ L + ++ CRAAAGG S
Sbjct: 11 SGALLLLFVSVSPCRAAAGGGPS 33
>03_05_0333 + 23245139-23245224,23245527-23245633,23246372-23247282
Length = 367
Score = 26.2 bits (55), Expect = 7.9
Identities = 13/43 (30%), Positives = 20/43 (46%)
Frame = -3
Query: 134 PDSRAGPGACLG*SSKY*GISAGSRPAGGDSQPQRN*APSTRP 6
P + P C S++ +A S P GG ++ AP+ RP
Sbjct: 72 PTAATAPARCTTSSARCTAAAAASGPGGGSARSAAAAAPTGRP 114
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,746,151
Number of Sequences: 37544
Number of extensions: 251400
Number of successful extensions: 705
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 698
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 705
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 564709324
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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