Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0024_K19
         (214 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC297.05 |||diacylglycerol binding protein |Schizosaccharomyce...    25   1.0  
SPCPB16A4.05c |||urease accessory protein UREG |Schizosaccharomy...    24   3.1  
SPAC3H8.06 |aur1||inositol phosphorylceramide synthase |Schizosa...    23   4.2  
SPAC1805.15c |pub2||ubiquitin-protein ligase Pub2|Schizosaccharo...    23   5.5  
SPAC1783.02c |vps66||acyltransferase |Schizosaccharomyces pombe|...    23   5.5  
SPAC26H5.02c |||DNA replication ATPase|Schizosaccharomyces pombe...    23   7.3  
SPBC947.01 |||AAA family ATPase, unknown biological role|Schizos...    23   7.3  
SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    22   9.6  
SPBPB2B2.05 |||GMP synthase [glutamine-hydrolyzing] |Schizosacch...    22   9.6  
SPBC215.01 ||SPBC3B9.20|GTPase activating protein|Schizosaccharo...    22   9.6  

>SPCC297.05 |||diacylglycerol binding protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 973

 Score = 25.4 bits (53), Expect = 1.0
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = +2

Query: 122 YNRPACRSD*RFRFCSSLLQSPTQR 196
           + RPA  S  +FRF SS  QS  +R
Sbjct: 700 FTRPASPSSSKFRFSSSSFQSTIRR 724


>SPCPB16A4.05c |||urease accessory protein UREG |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 286

 Score = 23.8 bits (49), Expect = 3.1
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = -1

Query: 106 RQNYEFLIHSKCIIEERSSLLCVGCLKEASV 14
           R++ EFLI +K + EER   +  G    A++
Sbjct: 126 REDQEFLIRNKALPEERIRAIETGGCPHAAI 156


>SPAC3H8.06 |aur1||inositol phosphorylceramide synthase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 422

 Score = 23.4 bits (48), Expect = 4.2
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -1

Query: 115 KKLRQNYEFLIHSKCIIEERSSLL 44
           K LR  YEF+IH   + E+ S+ L
Sbjct: 325 KILRWEYEFVIHGHGLSEKTSNSL 348


>SPAC1805.15c |pub2||ubiquitin-protein ligase
           Pub2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 671

 Score = 23.0 bits (47), Expect = 5.5
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = +1

Query: 1   ARGLRRSPLSNIRRTRGSTAPR*YILSEL 87
           A G  R PLS  +   GS  PR + + ++
Sbjct: 599 ATGTSRLPLSGFKDMHGSDGPRKFTIEKV 627


>SPAC1783.02c |vps66||acyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 328

 Score = 23.0 bits (47), Expect = 5.5
 Identities = 15/38 (39%), Positives = 17/38 (44%), Gaps = 2/38 (5%)
 Frame = -1

Query: 133 WSVVLKK--KLRQNYEFLIHSKCIIEERSSLLCVGCLK 26
           WS  LK    ++    F I S      R  LLC GCLK
Sbjct: 84  WSCFLKPILSIQPKLSFFIDSSL---SRLLLLCFGCLK 118


>SPAC26H5.02c |||DNA replication ATPase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 504

 Score = 22.6 bits (46), Expect = 7.3
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = -1

Query: 136 CWSVVLKKKLRQNYEFLIHSKCIIE 62
           C   VLKK  R N + +++  C++E
Sbjct: 228 CPVFVLKKLTRDNVKKILNHACLLE 252


>SPBC947.01 |||AAA family ATPase, unknown biological
           role|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 660

 Score = 22.6 bits (46), Expect = 7.3
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -3

Query: 86  NSLKMYYRGAVEPLVRRMFERGERRS 9
           +SL   Y G  E LVR +FE  +R++
Sbjct: 446 SSLTSKYLGDSEKLVRALFEVAKRQT 471


>SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 230

 Score = 22.2 bits (45), Expect = 9.6
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = +1

Query: 79  SELKIHNSVLVFSLIQPTSMSVRLTLSFLFF 171
           SEL +   +L+F       +S   + SFLFF
Sbjct: 108 SELSLFRCLLLFFFFLLFFLSFSFSFSFLFF 138


>SPBPB2B2.05 |||GMP synthase [glutamine-hydrolyzing]
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 237

 Score = 22.2 bits (45), Expect = 9.6
 Identities = 10/33 (30%), Positives = 17/33 (51%)
 Frame = +3

Query: 111 FFFNTTDQHVGQTNAFVSVLRCCSRQRNDYVRL 209
           +F N +  H+ Q+N F +V    S  RN  + +
Sbjct: 201 YFINRSKWHMKQSNIFSNVPHESSFYRNSIISI 233


>SPBC215.01 ||SPBC3B9.20|GTPase activating
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 834

 Score = 22.2 bits (45), Expect = 9.6
 Identities = 9/28 (32%), Positives = 13/28 (46%)
 Frame = +3

Query: 12  TTLASFKHPTHKRLDRSSIIHFE*IKNS 95
           T    F H TH  ++     H+E + NS
Sbjct: 472 TAFKKFSHITHSLIEDERKKHYEGVMNS 499


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 771,126
Number of Sequences: 5004
Number of extensions: 11360
Number of successful extensions: 38
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 38
length of database: 2,362,478
effective HSP length: 50
effective length of database: 2,112,278
effective search space used: 42245560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)