Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0024_K19
         (214 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_07_0071 - 12597668-12597784,12597966-12598166,12598804-12599601     27   2.1  
03_01_0141 + 1116833-1117082,1117658-1118574,1119417-1119579,111...    27   2.1  
07_03_0328 + 16833423-16833541,16833638-16833791,16834449-168344...    26   3.6  
10_08_1047 - 22549376-22551271                                         26   4.8  
10_01_0171 + 1917520-1918056,1919201-1919336,1921873-1922060,192...    25   8.3  

>10_07_0071 - 12597668-12597784,12597966-12598166,12598804-12599601
          Length = 371

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = +3

Query: 99  FCLSFFFNTTDQHVGQTNAFVSVLRCCSR 185
           FCLS + N     +G  + FVS  RCCS+
Sbjct: 97  FCLSPYVNCVRSRLGVGDPFVS--RCCSK 123


>03_01_0141 +
           1116833-1117082,1117658-1118574,1119417-1119579,
           1119668-1120497,1120562-1120570
          Length = 722

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = +1

Query: 4   RGLRRSPLSNIRRTRGSTAPR*YILSELKIHN 99
           R LRR+P + + R RG+     ++ S+  +HN
Sbjct: 69  RNLRRAPCTPLSRRRGTANTDGFLFSDSALHN 100


>07_03_0328 +
           16833423-16833541,16833638-16833791,16834449-16834490,
           16834964-16835104,16835471-16835728,16835857-16836492
          Length = 449

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 13/35 (37%), Positives = 22/35 (62%)
 Frame = -1

Query: 196 SLRWRLQQRRTETKALV*PTCWSVVLKKKLRQNYE 92
           +++WR   +RT TK +V   C S+V +  L+QN +
Sbjct: 417 AVQWRCNYKRTLTKCIV--HCKSLVHELSLQQNQQ 449


>10_08_1047 - 22549376-22551271
          Length = 631

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 8/19 (42%), Positives = 16/19 (84%)
 Frame = -3

Query: 80  LKMYYRGAVEPLVRRMFER 24
           L++Y+RG + PLV ++F++
Sbjct: 115 LRLYWRGGIYPLVLQLFDQ 133


>10_01_0171 +
           1917520-1918056,1919201-1919336,1921873-1922060,
           1922491-1922694,1923913-1924425
          Length = 525

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = -1

Query: 106 RQNYEFLIHSKCIIEERSSLLCVGCLKE 23
           R+NY  +I    +I  RS ++C+G LKE
Sbjct: 261 RKNYIIVI----LILRRSGIICIGALKE 284


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,885,739
Number of Sequences: 37544
Number of extensions: 68744
Number of successful extensions: 170
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 169
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 170
length of database: 14,793,348
effective HSP length: 50
effective length of database: 12,916,148
effective search space used: 258322960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)