Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0024_K19
         (214 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY369208-1|AAQ73312.1|  956|Homo sapiens MAM domain-containing g...    28   4.7  
AY358125-1|AAQ88492.1|  937|Homo sapiens MAM-domain protein prot...    28   4.7  
AY328482-1|AAP97010.1|  571|Homo sapiens MAM domain containing 1...    28   4.7  

>AY369208-1|AAQ73312.1|  956|Homo sapiens MAM domain-containing
           glycosylphosphatidylinositol anchor 2 protein.
          Length = 956

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = +3

Query: 90  NS*FCLSFFFNTTDQHVGQTNAFV 161
           N+ +C SFF++   QH+G  N ++
Sbjct: 832 NTAYCFSFFYHMYGQHIGVLNVYL 855


>AY358125-1|AAQ88492.1|  937|Homo sapiens MAM-domain protein
           protein.
          Length = 937

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = +3

Query: 90  NS*FCLSFFFNTTDQHVGQTNAFV 161
           N+ +C SFF++   QH+G  N ++
Sbjct: 813 NTAYCFSFFYHMYGQHIGVLNVYL 836


>AY328482-1|AAP97010.1|  571|Homo sapiens MAM domain containing 1
           protein.
          Length = 571

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = +3

Query: 90  NS*FCLSFFFNTTDQHVGQTNAFV 161
           N+ +C SFF++   QH+G  N ++
Sbjct: 447 NTAYCFSFFYHMYGQHIGVLNVYL 470


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,262,477
Number of Sequences: 237096
Number of extensions: 363911
Number of successful extensions: 4499
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4491
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4499
length of database: 76,859,062
effective HSP length: 49
effective length of database: 65,241,358
effective search space used: 1370068518
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)