Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0024_K19
         (214 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z71259-4|CAA95788.2|  501|Caenorhabditis elegans Hypothetical pr...    26   3.2  
AL132863-1|CAB60573.1|  477|Caenorhabditis elegans Hypothetical ...    26   3.2  
Z50029-2|CAA90341.3|  537|Caenorhabditis elegans Hypothetical pr...    26   4.2  
Z70782-11|CAA94848.1|  487|Caenorhabditis elegans Hypothetical p...    25   5.5  
Z70781-9|CAA94837.1|  487|Caenorhabditis elegans Hypothetical pr...    25   5.5  

>Z71259-4|CAA95788.2|  501|Caenorhabditis elegans Hypothetical
           protein F13G3.3 protein.
          Length = 501

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 14/29 (48%), Positives = 17/29 (58%)
 Frame = +1

Query: 121 IQPTSMSVRLTLSFLFFAVAVANATIMLD 207
           I P+ +SV L  SFLFF  AV    I +D
Sbjct: 5   IIPSVLSVVLLFSFLFFVTAVLLQFIRID 33


>AL132863-1|CAB60573.1|  477|Caenorhabditis elegans Hypothetical
           protein Y37H2A.1 protein.
          Length = 477

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 11/22 (50%), Positives = 16/22 (72%), Gaps = 1/22 (4%)
 Frame = -1

Query: 124 VLKKKLRQNYEFL-IHSKCIIE 62
           +LKKK+ +N++FL IH  C  E
Sbjct: 350 ILKKKMDENHKFLKIHRHCFTE 371


>Z50029-2|CAA90341.3|  537|Caenorhabditis elegans Hypothetical
           protein ZC504.2 protein.
          Length = 537

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 14/44 (31%), Positives = 25/44 (56%)
 Frame = +1

Query: 73  ILSELKIHNSVLVFSLIQPTSMSVRLTLSFLFFAVAVANATIML 204
           IL  L +   +L+  L+ PTS+ + L   +L F + + + +IML
Sbjct: 287 ILVTLTVFYLILI-DLVPPTSLVIPLIGKYLLFTMFLVSISIML 329


>Z70782-11|CAA94848.1|  487|Caenorhabditis elegans Hypothetical
           protein F57A8.7 protein.
          Length = 487

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 14/29 (48%), Positives = 16/29 (55%)
 Frame = +1

Query: 109 VFSLIQPTSMSVRLTLSFLFFAVAVANAT 195
           VFSLIQ T  S+ LT  F +     A AT
Sbjct: 16  VFSLIQNTQYSIYLTSMFSYLKKLDATAT 44


>Z70781-9|CAA94837.1|  487|Caenorhabditis elegans Hypothetical
           protein F57A8.7 protein.
          Length = 487

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 14/29 (48%), Positives = 16/29 (55%)
 Frame = +1

Query: 109 VFSLIQPTSMSVRLTLSFLFFAVAVANAT 195
           VFSLIQ T  S+ LT  F +     A AT
Sbjct: 16  VFSLIQNTQYSIYLTSMFSYLKKLDATAT 44


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,304,397
Number of Sequences: 27780
Number of extensions: 64903
Number of successful extensions: 207
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 207
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 207
length of database: 12,740,198
effective HSP length: 50
effective length of database: 11,351,198
effective search space used: 227023960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)