Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0024_K19
         (214 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    20   2.9  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    20   2.9  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    20   3.8  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    20   3.8  
AY823258-1|AAX18443.1|  145|Apis mellifera pburs protein.              19   8.9  
AM420632-1|CAM06632.1|  145|Apis mellifera bursicon subunit beta...    19   8.9  

>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 20.2 bits (40), Expect = 2.9
 Identities = 10/45 (22%), Positives = 20/45 (44%)
 Frame = -1

Query: 139 TCWSVVLKKKLRQNYEFLIHSKCIIEERSSLLCVGCLKEASVVAL 5
           T WS  +K  + +    ++   C    +  +  V CL+E+ +  L
Sbjct: 391 TEWSATVKAAISEVQRVVLGRLCEKVAKQLVNSVNCLRESFIGTL 435


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 20.2 bits (40), Expect = 2.9
 Identities = 10/45 (22%), Positives = 20/45 (44%)
 Frame = -1

Query: 139 TCWSVVLKKKLRQNYEFLIHSKCIIEERSSLLCVGCLKEASVVAL 5
           T WS  +K  + +    ++   C    +  +  V CL+E+ +  L
Sbjct: 429 TEWSATVKAAISEVQRVVLGRLCEKVAKQLVNSVNCLRESFIGTL 473


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 19.8 bits (39), Expect = 3.8
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = -1

Query: 82  HSKCIIEERSSLLCVGCLKE 23
           HS+C  E   S +CV  + E
Sbjct: 477 HSRCPPEIHKSCICVRFIAE 496


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 19.8 bits (39), Expect = 3.8
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = -1

Query: 82  HSKCIIEERSSLLCVGCLKE 23
           HS+C  E   S +CV  + E
Sbjct: 477 HSRCPPEIHKSCICVRFIAE 496


>AY823258-1|AAX18443.1|  145|Apis mellifera pburs protein.
          Length = 145

 Score = 18.6 bits (36), Expect = 8.9
 Identities = 6/11 (54%), Positives = 8/11 (72%)
 Frame = -2

Query: 195 RCVGDCNSEEQ 163
           +C G CNS+ Q
Sbjct: 68  KCEGFCNSQVQ 78


>AM420632-1|CAM06632.1|  145|Apis mellifera bursicon subunit beta
           protein precursor protein.
          Length = 145

 Score = 18.6 bits (36), Expect = 8.9
 Identities = 6/11 (54%), Positives = 8/11 (72%)
 Frame = -2

Query: 195 RCVGDCNSEEQ 163
           +C G CNS+ Q
Sbjct: 68  KCEGFCNSQVQ 78


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 52,216
Number of Sequences: 438
Number of extensions: 886
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 45
effective length of database: 126,633
effective search space used:  3165825
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 36 (19.4 bits)