Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0024_K18
         (144 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1620.11 |mug87||nucleoporin Nic96 homolog|Schizosaccharomyce...    27   0.26 
SPAC1F12.07 |||phosphoserine aminotransferase |Schizosaccharomyc...    23   5.5  
SPAC3F10.03 |||glycine tRNA-ligase|Schizosaccharomyces pombe|chr...    23   7.3  
SPAC10F6.15 |||S. pombe specific UPF0300 family protein 1|Schizo...    22   9.6  
SPBC12D12.01 |sad1|SPBC16H5.01c|spindle pole body protein Sad1|S...    22   9.6  

>SPCC1620.11 |mug87||nucleoporin Nic96 homolog|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 851

 Score = 27.5 bits (58), Expect = 0.26
 Identities = 11/27 (40%), Positives = 19/27 (70%)
 Frame = -1

Query: 114 ISNIMRQFFYLQRYKIVNKNIEQTPRA 34
           IS+  R+F   Q ++++NK I +TP+A
Sbjct: 260 ISDCSRKFLEAQFFEVLNKEIAKTPQA 286


>SPAC1F12.07 |||phosphoserine aminotransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 389

 Score = 23.0 bits (47), Expect = 5.5
 Identities = 7/28 (25%), Positives = 17/28 (60%)
 Frame = -2

Query: 143 DVAIELEISKFLILCDNFFIYNAIKLST 60
           ++ +   +S + I+ DN  +YN + ++T
Sbjct: 244 NIPVSPTVSDYKIMADNHSLYNTLPVAT 271


>SPAC3F10.03 |||glycine tRNA-ligase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 652

 Score = 22.6 bits (46), Expect = 7.3
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = +1

Query: 85  IKKLSHNIRNLLISSSIATS 144
           +KKLS  +RNL IS+ I  S
Sbjct: 554 VKKLSAKLRNLGISNKIDDS 573


>SPAC10F6.15 |||S. pombe specific UPF0300 family protein
           1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 432

 Score = 22.2 bits (45), Expect = 9.6
 Identities = 9/10 (90%), Positives = 10/10 (100%)
 Frame = -2

Query: 128 LEISKFLILC 99
           L+ISKFLILC
Sbjct: 20  LKISKFLILC 29


>SPBC12D12.01 |sad1|SPBC16H5.01c|spindle pole body protein
           Sad1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 514

 Score = 22.2 bits (45), Expect = 9.6
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = +2

Query: 2   HEASCRLVPNSARGVCSMF 58
           HE S  L PN+A  +C  F
Sbjct: 358 HEPSIALTPNNAVAMCWSF 376


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 543,663
Number of Sequences: 5004
Number of extensions: 6570
Number of successful extensions: 18
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 2,362,478
effective HSP length: 28
effective length of database: 2,222,366
effective search space used: 42224954
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)