Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0024_K18
         (144 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    23   0.33 
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    19   4.1  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              19   4.1  

>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 23.0 bits (47), Expect = 0.33
 Identities = 9/41 (21%), Positives = 21/41 (51%)
 Frame = -2

Query: 143 DVAIELEISKFLILCDNFFIYNAIKLSTKTLSKRLVPNSAR 21
           ++ +   + KF+ILC+     N  ++S    + ++ PN  +
Sbjct: 441 NIPVHATLEKFMILCNLMRTMNRKQISELESNMQISPNELK 481


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 19.4 bits (38), Expect = 4.1
 Identities = 7/16 (43%), Positives = 7/16 (43%)
 Frame = +3

Query: 24  CRIRHEAFAQCFC*QF 71
           CR     FA C C  F
Sbjct: 737 CRYEAHCFALCHCCDF 752


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 19.4 bits (38), Expect = 4.1
 Identities = 7/12 (58%), Positives = 7/12 (58%)
 Frame = +2

Query: 14  CRLVPNSARGVC 49
           C L PNS   VC
Sbjct: 93  CELSPNSTIAVC 104



 Score = 18.6 bits (36), Expect = 7.1
 Identities = 7/25 (28%), Positives = 14/25 (56%)
 Frame = -2

Query: 131 ELEISKFLILCDNFFIYNAIKLSTK 57
           E    ++ I+ DN  +YN  +L ++
Sbjct: 205 ECSNQEYEIMKDNLLLYNHARLMSQ 229


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 37,197
Number of Sequences: 438
Number of extensions: 604
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 28
effective length of database: 134,079
effective search space used:  2547501
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.9 bits)