Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0024_K17
(169 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1223.13 |cbf12||CBF1/Su|Schizosaccharomyces pombe|chr 3|||Ma... 25 1.0
SPBC651.09c |||RNA polymerase II associated Paf1 complex |Schizo... 25 1.3
SPAC664.01c |swi6|SPAC824.10c|chromodomain protein Swi6|Schizosa... 25 1.3
SPAC323.08 |||ribonuclease MRP complex subunit |Schizosaccharomy... 25 1.8
SPBC405.02c ||SPBC4C3.01|sequence orphan|Schizosaccharomyces pom... 24 2.3
SPBC1685.08 |||histone deacetylase complex subunit Cti6|Schizosa... 24 3.1
SPAC1A6.10 ||SPAC30D11.15c|Moeb/ThiF domain|Schizosaccharomyces ... 23 4.1
SPBC3B9.14c |mrpl3||mitochondrial ribosomal protein subunit L3|S... 23 5.4
SPCP1E11.04c |pal1||membrane associated protein Pal1 |Schizosacc... 23 5.4
SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces p... 23 5.4
SPBPB7E8.02 |||PSP1 family protein|Schizosaccharomyces pombe|chr... 23 5.4
SPBC16C6.09 |ogm4|oma4|protein O-mannosyltransferase Ogm4|Schizo... 23 7.1
SPAC24H6.09 |gef1||RhoGEF Gef1|Schizosaccharomyces pombe|chr 1||... 23 7.1
SPBC1826.01c |mot1||TATA-binding protein associated factor Mot1|... 22 9.4
SPBC4C3.12 |sep1||fork head transcription factor Sep1|Schizosacc... 22 9.4
SPCPB1C11.01 |amt1||ammonium transporter Amt1|Schizosaccharomyce... 22 9.4
>SPCC1223.13 |cbf12||CBF1/Su|Schizosaccharomyces pombe|chr
3|||Manual
Length = 963
Score = 25.4 bits (53), Expect = 1.0
Identities = 12/22 (54%), Positives = 13/22 (59%)
Frame = -2
Query: 69 YQAESSDSLLPSKRQPTPELPS 4
YQA S+ PS R PTP PS
Sbjct: 312 YQAAQSNISSPSSRFPTPYSPS 333
>SPBC651.09c |||RNA polymerase II associated Paf1 complex
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 560
Score = 25.0 bits (52), Expect = 1.3
Identities = 10/36 (27%), Positives = 17/36 (47%)
Frame = -2
Query: 141 SCNQLEDSERLRGPGHEYRDQNSRYQAESSDSLLPS 34
S + + R R P +Y +QN ++E + PS
Sbjct: 164 SARSVSERTRKRSPVSDYEEQNESEKSEEEEGYSPS 199
>SPAC664.01c |swi6|SPAC824.10c|chromodomain protein
Swi6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 328
Score = 25.0 bits (52), Expect = 1.3
Identities = 9/41 (21%), Positives = 21/41 (51%)
Frame = -2
Query: 129 LEDSERLRGPGHEYRDQNSRYQAESSDSLLPSKRQPTPELP 7
+E + P + +++ Q + S + K++P+PE+P
Sbjct: 210 IESDNESKSPSQKESNESEDIQIAETPSNVTPKKKPSPEVP 250
>SPAC323.08 |||ribonuclease MRP complex subunit |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 211
Score = 24.6 bits (51), Expect = 1.8
Identities = 12/39 (30%), Positives = 19/39 (48%)
Frame = -3
Query: 122 IRKDSEDLVMNTEIKIVVIRQNHRIPFYHPNGSQHQNYP 6
+R+ + L N + KI ++ Q + FY N H YP
Sbjct: 35 LRRLKQSLDGNEKAKIAILEQLPKSYFYFTNLIAHGQYP 73
>SPBC405.02c ||SPBC4C3.01|sequence orphan|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 447
Score = 24.2 bits (50), Expect = 2.3
Identities = 12/39 (30%), Positives = 19/39 (48%)
Frame = -2
Query: 168 PRFSLSAQISCNQLEDSERLRGPGHEYRDQNSRYQAESS 52
P F L ++ + + L+D+ L G QNS + SS
Sbjct: 282 PFFDLDSKPNLSTLQDNASLTSQGSNLSSQNSGLSSSSS 320
>SPBC1685.08 |||histone deacetylase complex subunit
Cti6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 424
Score = 23.8 bits (49), Expect = 3.1
Identities = 8/12 (66%), Positives = 10/12 (83%)
Frame = -3
Query: 59 NHRIPFYHPNGS 24
NHRIP HP+G+
Sbjct: 330 NHRIPQLHPDGT 341
>SPAC1A6.10 ||SPAC30D11.15c|Moeb/ThiF domain|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 485
Score = 23.4 bits (48), Expect = 4.1
Identities = 8/17 (47%), Positives = 12/17 (70%)
Frame = -3
Query: 80 KIVVIRQNHRIPFYHPN 30
K+ V+R N ++PF H N
Sbjct: 420 KVTVVRWNPQLPFDHTN 436
>SPBC3B9.14c |mrpl3||mitochondrial ribosomal protein subunit
L3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 326
Score = 23.0 bits (47), Expect = 5.4
Identities = 9/18 (50%), Positives = 12/18 (66%)
Frame = -2
Query: 123 DSERLRGPGHEYRDQNSR 70
D E LR PG Y+D+ +R
Sbjct: 157 DPEMLRKPGEIYKDEAAR 174
>SPCP1E11.04c |pal1||membrane associated protein Pal1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 425
Score = 23.0 bits (47), Expect = 5.4
Identities = 11/42 (26%), Positives = 19/42 (45%)
Frame = -2
Query: 168 PRFSLSAQISCNQLEDSERLRGPGHEYRDQNSRYQAESSDSL 43
PR+S A+ + S R R P H +++ +S S+
Sbjct: 98 PRYSKIARARSTHVASSSRHRSPSHNDSSPSTQSSLKSRGSI 139
>SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1323
Score = 23.0 bits (47), Expect = 5.4
Identities = 12/36 (33%), Positives = 17/36 (47%)
Frame = +3
Query: 48 NPMILPDNDYFDLGIHDQVLGVFPNLLTDYMKFERS 155
N ILPD+ Y + +H +P T + ERS
Sbjct: 700 NAPILPDDGYAYIRLHVYFPNNYPISATPVFQLERS 735
>SPBPB7E8.02 |||PSP1 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 749
Score = 23.0 bits (47), Expect = 5.4
Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
Frame = -2
Query: 168 PRFSLSAQISCNQLEDSERLRGPGHEYRDQNSRYQAESS--DSLLPSKRQP 22
P S S+ S NQL +S + PG D + Y ++S S +PS P
Sbjct: 95 PPSSTSSLSSNNQLMNSSVILSPGQFLPDDANAYGPKASLPPSEMPSHFHP 145
>SPBC16C6.09 |ogm4|oma4|protein O-mannosyltransferase
Ogm4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 778
Score = 22.6 bits (46), Expect = 7.1
Identities = 7/26 (26%), Positives = 16/26 (61%)
Frame = -3
Query: 86 EIKIVVIRQNHRIPFYHPNGSQHQNY 9
E+++ + RQN+ + +HP S ++
Sbjct: 555 ELQLTMFRQNNMLTEFHPYSSNPSDW 580
>SPAC24H6.09 |gef1||RhoGEF Gef1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 753
Score = 22.6 bits (46), Expect = 7.1
Identities = 12/45 (26%), Positives = 21/45 (46%)
Frame = -2
Query: 168 PRFSLSAQISCNQLEDSERLRGPGHEYRDQNSRYQAESSDSLLPS 34
P ++S ++ + + P Y D+N + A+SS LPS
Sbjct: 119 PNSNMSHSLNGDSTASNSSTLTPNRIYGDRNRQDYAQSSRYTLPS 163
>SPBC1826.01c |mot1||TATA-binding protein associated factor
Mot1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1953
Score = 22.2 bits (45), Expect = 9.4
Identities = 8/31 (25%), Positives = 16/31 (51%)
Frame = +3
Query: 75 YFDLGIHDQVLGVFPNLLTDYMKFERSVRSV 167
Y D G+ +++ P+LL +VR++
Sbjct: 1185 YLDSGLQSEIVSTLPHLLATLQSNYSAVRNM 1215
>SPBC4C3.12 |sep1||fork head transcription factor
Sep1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 663
Score = 22.2 bits (45), Expect = 9.4
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +3
Query: 39 VEGNPMILPDNDYFDLGIHDQVLGVFPNLLTDYMK 143
VEG P+ + D +HD VLG F + +T+ K
Sbjct: 373 VEGPPVSHLEKDVETPSVHDSVLG-FNDTVTNLGK 406
>SPCPB1C11.01 |amt1||ammonium transporter Amt1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 497
Score = 22.2 bits (45), Expect = 9.4
Identities = 6/9 (66%), Positives = 6/9 (66%)
Frame = +1
Query: 13 FWCWLPFGW 39
FW W P GW
Sbjct: 170 FWTWNPNGW 178
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 709,254
Number of Sequences: 5004
Number of extensions: 11062
Number of successful extensions: 53
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 53
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 53
length of database: 2,362,478
effective HSP length: 36
effective length of database: 2,182,334
effective search space used: 41464346
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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