Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0024_K17
         (169 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L29222-1|AAB59459.1|  136|Homo sapiens clk1 protein.                   29   3.6  
L29219-1|AAA61480.1|  484|Homo sapiens clk1 protein.                   29   3.6  
BC031549-1|AAH31549.1|  484|Homo sapiens CDC-like kinase 1 protein.    29   3.6  
BC028149-1|AAH28149.1|  136|Homo sapiens CDC-like kinase 1 protein.    29   3.6  
AC005037-5|AAY14722.1|  484|Homo sapiens unknown protein.              29   3.6  
X62048-1|CAA43979.1|  646|Homo sapiens Wee1 Hu protein.                28   6.3  
AF026547-1|AAC80576.1| 1321|Homo sapiens neurocan protein.             27   8.3  

>L29222-1|AAB59459.1|  136|Homo sapiens clk1 protein.
          Length = 136

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 12/19 (63%), Positives = 12/19 (63%)
 Frame = -2

Query: 102 PGHEYRDQNSRYQAESSDS 46
           PGH  RD  SRYQ  SS S
Sbjct: 86  PGHRQRDHESRYQNHSSKS 104


>L29219-1|AAA61480.1|  484|Homo sapiens clk1 protein.
          Length = 484

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 12/19 (63%), Positives = 12/19 (63%)
 Frame = -2

Query: 102 PGHEYRDQNSRYQAESSDS 46
           PGH  RD  SRYQ  SS S
Sbjct: 86  PGHRQRDHESRYQNHSSKS 104


>BC031549-1|AAH31549.1|  484|Homo sapiens CDC-like kinase 1 protein.
          Length = 484

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 12/19 (63%), Positives = 12/19 (63%)
 Frame = -2

Query: 102 PGHEYRDQNSRYQAESSDS 46
           PGH  RD  SRYQ  SS S
Sbjct: 86  PGHRQRDHESRYQNHSSKS 104


>BC028149-1|AAH28149.1|  136|Homo sapiens CDC-like kinase 1 protein.
          Length = 136

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 12/19 (63%), Positives = 12/19 (63%)
 Frame = -2

Query: 102 PGHEYRDQNSRYQAESSDS 46
           PGH  RD  SRYQ  SS S
Sbjct: 86  PGHRQRDHESRYQNHSSKS 104


>AC005037-5|AAY14722.1|  484|Homo sapiens unknown protein.
          Length = 484

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 12/19 (63%), Positives = 12/19 (63%)
 Frame = -2

Query: 102 PGHEYRDQNSRYQAESSDS 46
           PGH  RD  SRYQ  SS S
Sbjct: 86  PGHRQRDHESRYQNHSSKS 104


>X62048-1|CAA43979.1|  646|Homo sapiens Wee1 Hu protein.
          Length = 646

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 16/44 (36%), Positives = 22/44 (50%)
 Frame = -2

Query: 138 CNQLEDSERLRGPGHEYRDQNSRYQAESSDSLLPSKRQPTPELP 7
           C + E+ E   G GH    ++S +Q    DS LP +R PT   P
Sbjct: 33  CEEEEEEEEEEGSGHS-TGEDSAFQ--EPDSPLPPERSPTEPGP 73


>AF026547-1|AAC80576.1| 1321|Homo sapiens neurocan protein.
          Length = 1321

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 12/45 (26%), Positives = 21/45 (46%)
 Frame = -2

Query: 147  QISCNQLEDSERLRGPGHEYRDQNSRYQAESSDSLLPSKRQPTPE 13
            QI C +   S R+RG  H ++  +  +  +S       K+ PT +
Sbjct: 1268 QIVCTKPRRSHRMRGHHHHHQHHHQHHHHKSRKERRKHKKHPTED 1312


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,255,736
Number of Sequences: 237096
Number of extensions: 385576
Number of successful extensions: 1197
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1175
length of database: 76,859,062
effective HSP length: 35
effective length of database: 68,560,702
effective search space used: 1371214040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)