Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0024_K16
(284 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_1294 - 36076524-36076554,36076821-36076891,36077221-360772... 66 4e-12
05_05_0108 + 22451440-22451541,22452228-22452427,22452979-22453018 65 1e-11
07_03_0078 - 13147741-13148913 32 0.082
01_01_0869 + 6786136-6788577 29 0.76
07_03_0079 + 13169773-13170861 27 2.3
08_01_1033 - 10461135-10461377,10462124-10462354,10465853-104663... 27 3.1
05_01_0113 + 760584-760861,760964-761021,761229-761306 27 3.1
05_06_0124 - 25822176-25822633,25822738-25825420 26 4.1
02_05_0866 - 32331629-32334328 26 4.1
02_01_0411 - 2998806-3000938 26 4.1
11_06_0076 - 19830482-19831258,19837352-19837613,19838073-19838485 26 5.4
09_06_0270 + 21954652-21955245,21955827-21955964,21956050-219562... 26 5.4
01_03_0012 + 11638363-11638476,11638854-11640678,11641855-116420... 26 5.4
09_04_0015 + 13777383-13777621,13777887-13777972,13778094-137782... 25 7.1
05_01_0082 - 546134-546552,546755-547102,547192-547327,547404-54... 25 7.1
07_03_0737 + 21087442-21088282,21088402-21088524,21088623-210887... 25 9.4
05_04_0322 + 20239793-20240127,20240176-20240728,20241317-202414... 25 9.4
04_04_1695 + 35433975-35437040 25 9.4
04_04_1634 + 34937087-34937198,34937652-34937790,34938263-349383... 25 9.4
02_05_0522 - 29744368-29745534 25 9.4
01_06_1742 - 39585879-39585994,39586089-39586238,39586288-395863... 25 9.4
01_06_1620 + 38697960-38698131,38698532-38700732 25 9.4
01_06_1618 - 38681729-38683989,38685577-38685796 25 9.4
>01_06_1294 -
36076524-36076554,36076821-36076891,36077221-36077275,
36077363-36077562,36078614-36078715
Length = 152
Score = 66.1 bits (154), Expect = 4e-12
Identities = 38/73 (52%), Positives = 44/73 (60%)
Frame = +1
Query: 64 IGLRKGHKTTKISAGKKGITDKAIKIRPARLKGIQTKHSKFVRDLVREVVGRAQYEKRAM 243
+G+ KGH TK + + RP+ KG TK FVR L+REVVG A YEKR
Sbjct: 12 VGINKGHVVTK----------RELPPRPSDRKGKSTKRVNFVRGLIREVVGFAPYEKRIT 61
Query: 244 ELLKVSKDKRALK 282
ELLKV KDKRALK
Sbjct: 62 ELLKVGKDKRALK 74
>05_05_0108 + 22451440-22451541,22452228-22452427,22452979-22453018
Length = 113
Score = 64.9 bits (151), Expect = 1e-11
Identities = 37/73 (50%), Positives = 44/73 (60%)
Frame = +1
Query: 64 IGLRKGHKTTKISAGKKGITDKAIKIRPARLKGIQTKHSKFVRDLVREVVGRAQYEKRAM 243
+G+ KGH TK + + RP+ KG TK FVR+L+REV G A YEKR
Sbjct: 12 VGINKGHVVTK----------RELPPRPSDRKGKSTKRVTFVRNLIREVAGFAPYEKRIT 61
Query: 244 ELLKVSKDKRALK 282
ELLKV KDKRALK
Sbjct: 62 ELLKVGKDKRALK 74
>07_03_0078 - 13147741-13148913
Length = 390
Score = 31.9 bits (69), Expect = 0.082
Identities = 14/25 (56%), Positives = 17/25 (68%)
Frame = -1
Query: 149 AGLILMALSVIPFLPADIFVVLWPF 75
AGL+ AL VIP LP + +V WPF
Sbjct: 71 AGLLYFALVVIPALPGVLRLVAWPF 95
>01_01_0869 + 6786136-6788577
Length = 813
Score = 28.7 bits (61), Expect = 0.76
Identities = 10/22 (45%), Positives = 16/22 (72%)
Frame = +1
Query: 16 SARGNPKSWLARFEIAIGLRKG 81
S + +P SW R++IAIG+ +G
Sbjct: 594 SQKSSPLSWQVRYQIAIGIARG 615
>07_03_0079 + 13169773-13170861
Length = 362
Score = 27.1 bits (57), Expect = 2.3
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = -1
Query: 149 AGLILMALSVIPFLPADIFVVLWP 78
AGL+ AL IP LP+ + +V WP
Sbjct: 44 AGLLYFALVGIPALPSILRLVAWP 67
>08_01_1033 -
10461135-10461377,10462124-10462354,10465853-10466336,
10466566-10466822
Length = 404
Score = 26.6 bits (56), Expect = 3.1
Identities = 18/68 (26%), Positives = 31/68 (45%), Gaps = 2/68 (2%)
Frame = +2
Query: 53 LKSQLVCEKATKRQRYPLAKR--VLQTKPLKLGQLG*RAFKPNTLSLSAIWFVKLLGAHS 226
L+S V + Q++P + VL+ L L + P TL +SA +L +++
Sbjct: 122 LRSSAVARRRRSLQQFPRNRAFGVLELNTPNLRSLKMCCYAPGTLRISAPRLEELRSSNN 181
Query: 227 MRRGRWNC 250
+ RW C
Sbjct: 182 VIDMRWQC 189
>05_01_0113 + 760584-760861,760964-761021,761229-761306
Length = 137
Score = 26.6 bits (56), Expect = 3.1
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = +1
Query: 73 RKGHKTTKISAGKKGITDKAIKIRPARL 156
RKGHK +ISA K+ T + +K P L
Sbjct: 81 RKGHKCDRISAEKRANTVELMKKMPQML 108
>05_06_0124 - 25822176-25822633,25822738-25825420
Length = 1046
Score = 26.2 bits (55), Expect = 4.1
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = +1
Query: 16 SARGNPKSWLARFEIAIGLRKG 81
S R P WLAR +A+G +G
Sbjct: 811 SVRRAPLDWLARVRVAVGAARG 832
>02_05_0866 - 32331629-32334328
Length = 899
Score = 26.2 bits (55), Expect = 4.1
Identities = 10/21 (47%), Positives = 12/21 (57%)
Frame = +1
Query: 19 ARGNPKSWLARFEIAIGLRKG 81
A G P W R E+AIG +G
Sbjct: 618 AAGQPLEWKERMEVAIGAARG 638
>02_01_0411 - 2998806-3000938
Length = 710
Score = 26.2 bits (55), Expect = 4.1
Identities = 15/49 (30%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
Frame = -3
Query: 234 LLILCAPNNFTNQIA--DKLRVFGLNAL*PSWPNFNGFVCNTLFASGYL 94
++I + N FT ++A + + L AL SW NFNG + ++++ L
Sbjct: 318 VIINLSTNKFTGELAKVNFSNLPNLKALDFSWNNFNGTIPESIYSCSNL 366
>11_06_0076 - 19830482-19831258,19837352-19837613,19838073-19838485
Length = 483
Score = 25.8 bits (54), Expect = 5.4
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = +1
Query: 142 RPARLKGIQTKHSKFVRDLVREVVGRAQYEKRAME 246
RP +G SKF+R R++ G+A +++R E
Sbjct: 396 RPVCQEGDNLLVSKFLRTYNRDIHGKAMFDERITE 430
>09_06_0270 +
21954652-21955245,21955827-21955964,21956050-21956295,
21956407-21956520,21956633-21956815,21956926-21957143,
21957210-21957246,21957865-21958219,21958284-21958337,
21958513-21958529
Length = 651
Score = 25.8 bits (54), Expect = 5.4
Identities = 14/38 (36%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Frame = -3
Query: 276 GALIFRYF-EQFHRPLLILCAPNNFTNQIADKLRVFGL 166
G + F Y E F P+L+LC+ NN + D L+ G+
Sbjct: 258 GDVSFPYLIESF--PMLLLCSENNHLKPLIDFLQYIGI 293
>01_03_0012 +
11638363-11638476,11638854-11640678,11641855-11642096,
11642198-11642327,11642464-11642774
Length = 873
Score = 25.8 bits (54), Expect = 5.4
Identities = 11/26 (42%), Positives = 14/26 (53%)
Frame = +1
Query: 4 GCRNSARGNPKSWLARFEIAIGLRKG 81
G R + G P SW R +IA+ KG
Sbjct: 772 GVRGAQPGTPLSWEQRVKIALSAAKG 797
>09_04_0015 +
13777383-13777621,13777887-13777972,13778094-13778208,
13778380-13778680
Length = 246
Score = 25.4 bits (53), Expect = 7.1
Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
Frame = +1
Query: 13 NSARGNPKSWLA-RFEIAIGLRKGH-KTTKISAG 108
NS R NPK+WL + +GL K + +SAG
Sbjct: 132 NSLRSNPKAWLEFMMKFELGLEKPEPRRALMSAG 165
>05_01_0082 -
546134-546552,546755-547102,547192-547327,547404-547702,
548434-548500
Length = 422
Score = 25.4 bits (53), Expect = 7.1
Identities = 11/24 (45%), Positives = 13/24 (54%)
Frame = +1
Query: 10 RNSARGNPKSWLARFEIAIGLRKG 81
R S P SW R +IA+G KG
Sbjct: 167 RRSTHFQPLSWNLRMKIALGAAKG 190
>07_03_0737 +
21087442-21088282,21088402-21088524,21088623-21088744,
21088784-21089027,21089430-21089670,21089746-21089899,
21090179-21090214,21090215-21090520
Length = 688
Score = 25.0 bits (52), Expect = 9.4
Identities = 9/23 (39%), Positives = 15/23 (65%)
Frame = +1
Query: 13 NSARGNPKSWLARFEIAIGLRKG 81
+++RGN SW ++ I G+ KG
Sbjct: 445 HASRGNALSWDQQYNIIFGIAKG 467
>05_04_0322 +
20239793-20240127,20240176-20240728,20241317-20241425,
20244456-20244723,20244943-20245197,20245594-20246539
Length = 821
Score = 25.0 bits (52), Expect = 9.4
Identities = 9/15 (60%), Positives = 12/15 (80%)
Frame = +1
Query: 37 SWLARFEIAIGLRKG 81
SW R++IAIG+ KG
Sbjct: 668 SWSRRYQIAIGISKG 682
>04_04_1695 + 35433975-35437040
Length = 1021
Score = 25.0 bits (52), Expect = 9.4
Identities = 15/56 (26%), Positives = 26/56 (46%)
Frame = +1
Query: 115 GITDKAIKIRPARLKGIQTKHSKFVRDLVREVVGRAQYEKRAMELLKVSKDKRALK 282
G D +++R KG+ K + R+V ++ ++ +L V KDK LK
Sbjct: 308 GALDPYVEVRLGNFKGVTRHLEKNPNPVWRQVFAFSRDHLQSSQLEVVVKDKDVLK 363
>04_04_1634 +
34937087-34937198,34937652-34937790,34938263-34938334,
34938414-34938546,34938591-34938730,34939478-34939585,
34939650-34939720,34940297-34940545,34940618-34940823,
34940894-34941026,34941099-34941101,34941136-34941293,
34941420-34941683,34941869-34942114
Length = 677
Score = 25.0 bits (52), Expect = 9.4
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = +1
Query: 13 NSARGNPKSWLARFEIAIGLRKG 81
+ G SWL R +IAIG+ +G
Sbjct: 455 SDGEGAQLSWLRRMKIAIGIAQG 477
>02_05_0522 - 29744368-29745534
Length = 388
Score = 25.0 bits (52), Expect = 9.4
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = -1
Query: 152 LAGLILMALSVIPFLPADIFVVLWP 78
+A L+ AL +IP LP+ + WP
Sbjct: 70 VAALLYFALVMIPVLPSGMEFAAWP 94
>01_06_1742 - 39585879-39585994,39586089-39586238,39586288-39586375,
39586479-39586640,39586753-39586877,39586992-39587030,
39587290-39587476,39587643-39587713,39589371-39589564,
39589656-39589767,39589899-39590082,39590177-39590503,
39590780-39591061,39591148-39591621,39591730-39591813,
39591850-39591939,39592024-39592247,39592503-39592600,
39592679-39593169,39593249-39593520,39594266-39594522,
39594672-39594890,39595007-39595167,39595249-39595441,
39595528-39595633,39595947-39596121,39596404-39596556,
39596663-39596794,39597120-39597184,39597754-39597819,
39598433-39598511,39598587-39598767,39598864-39598976
Length = 1889
Score = 25.0 bits (52), Expect = 9.4
Identities = 21/74 (28%), Positives = 34/74 (45%), Gaps = 3/74 (4%)
Frame = +1
Query: 4 GCRNSARGNPKSWLARFEIAIGLRKGH---KTTKISAGKKGITDKAIKIRPARLKGIQTK 174
G A +P+ WLA +++I K+ ++ I DKAI + A KG +
Sbjct: 1054 GYVRDAAFDPRRWLAPGQLSIRPSPCECPVKSEVVTDDIHIIDDKAIVLGKACDKGHRWM 1113
Query: 175 HSKFVRDLVREVVG 216
SK + D V ++G
Sbjct: 1114 CSKTIADCVEAIIG 1127
>01_06_1620 + 38697960-38698131,38698532-38700732
Length = 790
Score = 25.0 bits (52), Expect = 9.4
Identities = 9/15 (60%), Positives = 12/15 (80%)
Frame = +1
Query: 37 SWLARFEIAIGLRKG 81
SW R++IAIG+ KG
Sbjct: 589 SWKRRYQIAIGIAKG 603
>01_06_1618 - 38681729-38683989,38685577-38685796
Length = 826
Score = 25.0 bits (52), Expect = 9.4
Identities = 9/19 (47%), Positives = 14/19 (73%)
Frame = +1
Query: 25 GNPKSWLARFEIAIGLRKG 81
G SW AR++IA+G+ +G
Sbjct: 612 GGVLSWEARYQIALGVARG 630
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,851,090
Number of Sequences: 37544
Number of extensions: 139070
Number of successful extensions: 422
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 416
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 422
length of database: 14,793,348
effective HSP length: 70
effective length of database: 12,165,268
effective search space used: 291966432
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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