Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0024_K16
(284 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
CR533465-1|CAG38496.1| 105|Homo sapiens RPL36 protein. 83 1e-16
BC091508-1|AAH91508.1| 105|Homo sapiens ribosomal protein L36 p... 83 1e-16
BC004971-1|AAH04971.1| 105|Homo sapiens ribosomal protein L36 p... 83 1e-16
BC003052-1|AAH03052.1| 105|Homo sapiens ribosomal protein L36 p... 83 1e-16
AB061833-1|BAB79471.1| 105|Homo sapiens ribosomal protein L36 p... 83 1e-16
BC071958-1|AAH71958.1| 516|Homo sapiens nucleolar complex assoc... 30 1.6
BC007893-1|AAH07893.2| 494|Homo sapiens NOC4L protein protein. 30 1.6
BC001191-1|AAH01191.1| 516|Homo sapiens nucleolar complex assoc... 30 1.6
AK074489-1|BAC11020.1| 344|Homo sapiens protein ( Homo sapiens ... 30 1.6
X83957-1|CAA58788.1| 6669|Homo sapiens nebulin protein. 29 2.1
U35637-1|AAB02622.1| 3007|Homo sapiens nebulin protein. 29 2.1
AC009497-1|AAY14651.1| 2802|Homo sapiens unknown protein. 29 2.1
AY393106-1|AAS86042.1| 153|Homo sapiens immunoglobulin heavy ch... 28 6.3
BC070071-1|AAH70071.1| 1271|Homo sapiens RBM16 protein protein. 27 8.3
AL591499-2|CAH70694.1| 1271|Homo sapiens RNA binding motif prote... 27 8.3
AL136976-1|CAI21482.1| 1271|Homo sapiens RNA binding motif prote... 27 8.3
AL121952-2|CAI21474.1| 1271|Homo sapiens RNA binding motif prote... 27 8.3
AF041853-1|AAC72294.1| 702|Homo sapiens kinesin family member p... 27 8.3
AB029039-1|BAA83068.2| 1330|Homo sapiens KIAA1116 protein protein. 27 8.3
>CR533465-1|CAG38496.1| 105|Homo sapiens RPL36 protein.
Length = 105
Score = 83.4 bits (197), Expect = 1e-16
Identities = 45/78 (57%), Positives = 54/78 (69%)
Frame = +1
Query: 49 RFEIAIGLRKGHKTTKISAGKKGITDKAIKIRPARLKGIQTKHSKFVRDLVREVVGRAQY 228
R+ +A+GL KGHK TK K R +R +G TKH+KFVRD++REV G A Y
Sbjct: 4 RYPMAVGLNKGHKVTK----------NVSKPRHSRRRGRLTKHTKFVRDMIREVCGFAPY 53
Query: 229 EKRAMELLKVSKDKRALK 282
E+RAMELLKVSKDKRALK
Sbjct: 54 ERRAMELLKVSKDKRALK 71
>BC091508-1|AAH91508.1| 105|Homo sapiens ribosomal protein L36
protein.
Length = 105
Score = 83.4 bits (197), Expect = 1e-16
Identities = 45/78 (57%), Positives = 54/78 (69%)
Frame = +1
Query: 49 RFEIAIGLRKGHKTTKISAGKKGITDKAIKIRPARLKGIQTKHSKFVRDLVREVVGRAQY 228
R+ +A+GL KGHK TK K R +R +G TKH+KFVRD++REV G A Y
Sbjct: 4 RYPMAVGLNKGHKVTK----------NVSKPRHSRRRGRLTKHTKFVRDMIREVCGFAPY 53
Query: 229 EKRAMELLKVSKDKRALK 282
E+RAMELLKVSKDKRALK
Sbjct: 54 ERRAMELLKVSKDKRALK 71
>BC004971-1|AAH04971.1| 105|Homo sapiens ribosomal protein L36
protein.
Length = 105
Score = 83.4 bits (197), Expect = 1e-16
Identities = 45/78 (57%), Positives = 54/78 (69%)
Frame = +1
Query: 49 RFEIAIGLRKGHKTTKISAGKKGITDKAIKIRPARLKGIQTKHSKFVRDLVREVVGRAQY 228
R+ +A+GL KGHK TK K R +R +G TKH+KFVRD++REV G A Y
Sbjct: 4 RYPMAVGLNKGHKVTK----------NVSKPRHSRRRGRLTKHTKFVRDMIREVCGFAPY 53
Query: 229 EKRAMELLKVSKDKRALK 282
E+RAMELLKVSKDKRALK
Sbjct: 54 ERRAMELLKVSKDKRALK 71
>BC003052-1|AAH03052.1| 105|Homo sapiens ribosomal protein L36
protein.
Length = 105
Score = 83.4 bits (197), Expect = 1e-16
Identities = 45/78 (57%), Positives = 54/78 (69%)
Frame = +1
Query: 49 RFEIAIGLRKGHKTTKISAGKKGITDKAIKIRPARLKGIQTKHSKFVRDLVREVVGRAQY 228
R+ +A+GL KGHK TK K R +R +G TKH+KFVRD++REV G A Y
Sbjct: 4 RYPMAVGLNKGHKVTK----------NVSKPRHSRRRGRLTKHTKFVRDMIREVCGFAPY 53
Query: 229 EKRAMELLKVSKDKRALK 282
E+RAMELLKVSKDKRALK
Sbjct: 54 ERRAMELLKVSKDKRALK 71
>AB061833-1|BAB79471.1| 105|Homo sapiens ribosomal protein L36
protein.
Length = 105
Score = 83.4 bits (197), Expect = 1e-16
Identities = 45/78 (57%), Positives = 54/78 (69%)
Frame = +1
Query: 49 RFEIAIGLRKGHKTTKISAGKKGITDKAIKIRPARLKGIQTKHSKFVRDLVREVVGRAQY 228
R+ +A+GL KGHK TK K R +R +G TKH+KFVRD++REV G A Y
Sbjct: 4 RYPMAVGLNKGHKVTK----------NVSKPRHSRRRGRLTKHTKFVRDMIREVCGFAPY 53
Query: 229 EKRAMELLKVSKDKRALK 282
E+RAMELLKVSKDKRALK
Sbjct: 54 ERRAMELLKVSKDKRALK 71
>BC071958-1|AAH71958.1| 516|Homo sapiens nucleolar complex
associated 4 homolog (S. cerevisiae) protein.
Length = 516
Score = 29.9 bits (64), Expect = 1.6
Identities = 16/38 (42%), Positives = 26/38 (68%), Gaps = 2/38 (5%)
Frame = +2
Query: 137 KLGQL-G*RAFKPNTLSLSAIW-FVKLLGAHSMRRGRW 244
+LG+L G +F+ L+LSA+ FV+L GAH + + +W
Sbjct: 102 RLGELLGHPSFQVKELALSALLKFVQLEGAHPLEKSKW 139
>BC007893-1|AAH07893.2| 494|Homo sapiens NOC4L protein protein.
Length = 494
Score = 29.9 bits (64), Expect = 1.6
Identities = 16/38 (42%), Positives = 26/38 (68%), Gaps = 2/38 (5%)
Frame = +2
Query: 137 KLGQL-G*RAFKPNTLSLSAIW-FVKLLGAHSMRRGRW 244
+LG+L G +F+ L+LSA+ FV+L GAH + + +W
Sbjct: 80 RLGELLGHPSFQVKELALSALLKFVQLEGAHPLEKSKW 117
>BC001191-1|AAH01191.1| 516|Homo sapiens nucleolar complex
associated 4 homolog (S. cerevisiae) protein.
Length = 516
Score = 29.9 bits (64), Expect = 1.6
Identities = 16/38 (42%), Positives = 26/38 (68%), Gaps = 2/38 (5%)
Frame = +2
Query: 137 KLGQL-G*RAFKPNTLSLSAIW-FVKLLGAHSMRRGRW 244
+LG+L G +F+ L+LSA+ FV+L GAH + + +W
Sbjct: 102 RLGELLGHPSFQVKELALSALLKFVQLEGAHPLEKSKW 139
>AK074489-1|BAC11020.1| 344|Homo sapiens protein ( Homo sapiens
cDNA FLJ90008 fis, clone HEMBA1000275. ).
Length = 344
Score = 29.9 bits (64), Expect = 1.6
Identities = 16/38 (42%), Positives = 26/38 (68%), Gaps = 2/38 (5%)
Frame = +2
Query: 137 KLGQL-G*RAFKPNTLSLSAIW-FVKLLGAHSMRRGRW 244
+LG+L G +F+ L+LSA+ FV+L GAH + + +W
Sbjct: 102 RLGELLGHPSFQVKELALSALLKFVQLEGAHPLEKSKW 139
>X83957-1|CAA58788.1| 6669|Homo sapiens nebulin protein.
Length = 6669
Score = 29.5 bits (63), Expect = 2.1
Identities = 18/38 (47%), Positives = 22/38 (57%), Gaps = 3/38 (7%)
Frame = +1
Query: 130 AIKIRPARLKGIQT---KHSKFVRDLVREVVGRAQYEK 234
A K RP G QT KH+K V+D+V E + QYEK
Sbjct: 5200 ATKERPHHHAGNQTTALKHAKDVKDMVSEKKYKIQYEK 5237
>U35637-1|AAB02622.1| 3007|Homo sapiens nebulin protein.
Length = 3007
Score = 29.5 bits (63), Expect = 2.1
Identities = 18/38 (47%), Positives = 22/38 (57%), Gaps = 3/38 (7%)
Frame = +1
Query: 130 AIKIRPARLKGIQT---KHSKFVRDLVREVVGRAQYEK 234
A K RP G QT KH+K V+D+V E + QYEK
Sbjct: 1631 ATKERPHHHAGNQTTALKHAKDVKDMVSEKKYKIQYEK 1668
>AC009497-1|AAY14651.1| 2802|Homo sapiens unknown protein.
Length = 2802
Score = 29.5 bits (63), Expect = 2.1
Identities = 18/38 (47%), Positives = 22/38 (57%), Gaps = 3/38 (7%)
Frame = +1
Query: 130 AIKIRPARLKGIQT---KHSKFVRDLVREVVGRAQYEK 234
A K RP G QT KH+K V+D+V E + QYEK
Sbjct: 1333 ATKERPHHHAGNQTTALKHAKDVKDMVSEKKYKIQYEK 1370
>AY393106-1|AAS86042.1| 153|Homo sapiens immunoglobulin heavy chain
protein.
Length = 153
Score = 27.9 bits (59), Expect = 6.3
Identities = 11/33 (33%), Positives = 20/33 (60%)
Frame = -1
Query: 275 ARLSFDTLSNSIALFSYCARPTTSRTKSRTNLE 177
A + +L + YCARP+ ++++SRT L+
Sbjct: 75 AYMELSSLRSEDTAVYYCARPSHTKSRSRTTLD 107
>BC070071-1|AAH70071.1| 1271|Homo sapiens RBM16 protein protein.
Length = 1271
Score = 27.5 bits (58), Expect = 8.3
Identities = 13/31 (41%), Positives = 20/31 (64%)
Frame = +1
Query: 94 KISAGKKGITDKAIKIRPARLKGIQTKHSKF 186
K+S+G I K IKI A KG++T++ +F
Sbjct: 531 KLSSGSYKIGSKVIKIAWALNKGVKTEYKQF 561
>AL591499-2|CAH70694.1| 1271|Homo sapiens RNA binding motif protein
16 protein.
Length = 1271
Score = 27.5 bits (58), Expect = 8.3
Identities = 13/31 (41%), Positives = 20/31 (64%)
Frame = +1
Query: 94 KISAGKKGITDKAIKIRPARLKGIQTKHSKF 186
K+S+G I K IKI A KG++T++ +F
Sbjct: 531 KLSSGSYKIGSKVIKIAWALNKGVKTEYKQF 561
>AL136976-1|CAI21482.1| 1271|Homo sapiens RNA binding motif protein
16 protein.
Length = 1271
Score = 27.5 bits (58), Expect = 8.3
Identities = 13/31 (41%), Positives = 20/31 (64%)
Frame = +1
Query: 94 KISAGKKGITDKAIKIRPARLKGIQTKHSKF 186
K+S+G I K IKI A KG++T++ +F
Sbjct: 531 KLSSGSYKIGSKVIKIAWALNKGVKTEYKQF 561
>AL121952-2|CAI21474.1| 1271|Homo sapiens RNA binding motif protein
16 protein.
Length = 1271
Score = 27.5 bits (58), Expect = 8.3
Identities = 13/31 (41%), Positives = 20/31 (64%)
Frame = +1
Query: 94 KISAGKKGITDKAIKIRPARLKGIQTKHSKF 186
K+S+G I K IKI A KG++T++ +F
Sbjct: 531 KLSSGSYKIGSKVIKIAWALNKGVKTEYKQF 561
>AF041853-1|AAC72294.1| 702|Homo sapiens kinesin family member
protein KIF3A protein.
Length = 702
Score = 27.5 bits (58), Expect = 8.3
Identities = 18/66 (27%), Positives = 34/66 (51%), Gaps = 1/66 (1%)
Frame = +1
Query: 85 KTTKISAGKKGIT-DKAIKIRPARLKGIQTKHSKFVRDLVREVVGRAQYEKRAMELLKVS 261
K +I GKK ++ DK I+++ + + +K + RA+ EKR +LLK
Sbjct: 406 KKRRIQIGKKKVSPDKMIEMQAKIDEERKALETKLDMEEEERNKARAELEKREKDLLKAQ 465
Query: 262 KDKRAL 279
++ ++L
Sbjct: 466 QEHQSL 471
>AB029039-1|BAA83068.2| 1330|Homo sapiens KIAA1116 protein protein.
Length = 1330
Score = 27.5 bits (58), Expect = 8.3
Identities = 13/31 (41%), Positives = 20/31 (64%)
Frame = +1
Query: 94 KISAGKKGITDKAIKIRPARLKGIQTKHSKF 186
K+S+G I K IKI A KG++T++ +F
Sbjct: 590 KLSSGSYKIGSKVIKIAWALNKGVKTEYKQF 620
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 41,666,640
Number of Sequences: 237096
Number of extensions: 728065
Number of successful extensions: 5483
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 5426
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5478
length of database: 76,859,062
effective HSP length: 71
effective length of database: 60,025,246
effective search space used: 1380580658
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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