Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0024_K16
         (284 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    21   3.0  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          21   3.0  
AB073998-1|BAC76402.1|  339|Apis mellifera preprotachykinin prot...    21   3.9  
AB073995-1|BAC76399.1|  301|Apis mellifera preprotachykinin prot...    21   3.9  
AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            20   5.2  
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    20   6.8  
L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.        19   9.0  
DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated...    19   9.0  

>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 21.0 bits (42), Expect = 3.0
 Identities = 10/25 (40%), Positives = 12/25 (48%)
 Frame = +1

Query: 172 KHSKFVRDLVREVVGRAQYEKRAME 246
           K   FV   V EV+   + EKR  E
Sbjct: 517 KKGSFVTQYVGEVITNEEAEKRGKE 541


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 21.0 bits (42), Expect = 3.0
 Identities = 11/28 (39%), Positives = 14/28 (50%)
 Frame = -1

Query: 107 PADIFVVLWPFRRPIAISNRASHDFGLP 24
           PAD+   L   R       RAS +FG+P
Sbjct: 522 PADLDRALEAIRSGQTSVQRASTEFGIP 549


>AB073998-1|BAC76402.1|  339|Apis mellifera preprotachykinin
           protein.
          Length = 339

 Score = 20.6 bits (41), Expect = 3.9
 Identities = 10/41 (24%), Positives = 16/41 (39%)
 Frame = +1

Query: 160 GIQTKHSKFVRDLVREVVGRAQYEKRAMELLKVSKDKRALK 282
           G+Q K      D +   +    YEKR+ +   V     + K
Sbjct: 213 GLQRKKDTTFDDYLDYAINPFDYEKRSTDFQDVESGSESFK 253


>AB073995-1|BAC76399.1|  301|Apis mellifera preprotachykinin
           protein.
          Length = 301

 Score = 20.6 bits (41), Expect = 3.9
 Identities = 10/41 (24%), Positives = 16/41 (39%)
 Frame = +1

Query: 160 GIQTKHSKFVRDLVREVVGRAQYEKRAMELLKVSKDKRALK 282
           G+Q K      D +   +    YEKR+ +   V     + K
Sbjct: 213 GLQRKKDTTFDDYLDYAINPFDYEKRSTDFQDVESGSESFK 253


>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 20.2 bits (40), Expect = 5.2
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = -1

Query: 74  RRPIAISNRASHDFGLPR 21
           R  +A++   SH FG PR
Sbjct: 325 RYKMAVAFMLSHPFGTPR 342


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 19.8 bits (39), Expect = 6.8
 Identities = 8/10 (80%), Positives = 9/10 (90%)
 Frame = +2

Query: 116 VLQTKPLKLG 145
           V+QTK LKLG
Sbjct: 234 VIQTKSLKLG 243


>L10710-1|AAA27730.1|  382|Apis mellifera hyaluronidase protein.
          Length = 382

 Score = 19.4 bits (38), Expect = 9.0
 Identities = 6/13 (46%), Positives = 10/13 (76%)
 Frame = +3

Query: 45  RPI*NRNWSAKRP 83
           RPI  +NW++ +P
Sbjct: 148 RPIFRQNWASLQP 160


>DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 391

 Score = 19.4 bits (38), Expect = 9.0
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = +2

Query: 158 RAFKPNTLSLSAIWFVKLLG 217
           + F P+TL +   WF   LG
Sbjct: 205 QTFAPSTLVVMLSWFSFWLG 224


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 80,005
Number of Sequences: 438
Number of extensions: 1549
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 49
effective length of database: 124,881
effective search space used:  5619645
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)