Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0024_K13
         (175 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_03_0525 + 15002846-15003048,15004814-15004937,15005458-150054...    27   2.1  
06_03_1336 - 29424470-29424897,29425243-29429653                       26   3.7  
07_01_0073 - 536110-536272,536402-536547,536647-536715                 25   6.5  

>05_03_0525 +
           15002846-15003048,15004814-15004937,15005458-15005481,
           15005995-15006779,15006839-15006873,15007108-15007601,
           15007951-15008452,15008725-15008867,15009523-15009576,
           15010255-15010362,15010529-15010705,15011169-15011186,
           15011561-15011938,15012125-15012310,15012356-15013205,
           15013362-15013402,15013491-15013868,15014195-15014236,
           15014528-15014678,15015621-15015670
          Length = 1580

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 9/24 (37%), Positives = 17/24 (70%)
 Frame = -3

Query: 122 ASNIRQHIQLLDNSNIRRRPRLHK 51
           +++++ H Q+ DN N+  RP L+K
Sbjct: 204 SNHLKLHRQISDNGNVESRPELNK 227


>06_03_1336 - 29424470-29424897,29425243-29429653
          Length = 1612

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 10/37 (27%), Positives = 23/37 (62%), Gaps = 2/37 (5%)
 Frame = -1

Query: 154 EHGNQYYTREE--HQISGNISSCWIIVISAEDQGFIR 50
           E G+ YY+  +  H+++  +SSC  + +S+ +  F++
Sbjct: 586 EDGSPYYSMHDLLHELALKVSSCECLAVSSSNVRFVQ 622


>07_01_0073 - 536110-536272,536402-536547,536647-536715
          Length = 125

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 7/26 (26%), Positives = 18/26 (69%)
 Frame = -3

Query: 134 YPRRASNIRQHIQLLDNSNIRRRPRL 57
           + + A ++R+H+  ++ +N+ R P+L
Sbjct: 17  HSKAAEDVRRHLDAMEKANLERLPQL 42


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,223,106
Number of Sequences: 37544
Number of extensions: 57555
Number of successful extensions: 128
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 128
length of database: 14,793,348
effective HSP length: 37
effective length of database: 13,404,220
effective search space used: 268084400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)