Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0024_K12
         (188 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3H5.10 |rpl3202|rpl32-2, rpl32|60S ribosomal protein L32|Sch...    30   0.046
SPBC16C6.11 |rpl3201|rpl32-1|60S ribosomal protein L32|Schizosac...    27   0.33 
SPBC651.08c |rpc1||DNA-directed RNA polymerase III complex large...    24   2.3  
SPBC14F5.07 |||ER-localized ubiquitin ligase |Schizosaccharomyce...    23   4.0  
SPBC31E1.06 |bms1|SPBC800.01|GTP binding protein Bms1|Schizosacc...    23   5.3  
SPBC12C2.13c |fnx1|SPBC21D10.04c|MFS multidrug efflux transporte...    23   5.3  
SPBC1773.15 |||membrane transporter|Schizosaccharomyces pombe|ch...    23   7.0  
SPAC664.15 |||CCR4-Not complex subunit Caf4/Mdv1 |Schizosaccharo...    23   7.0  
SPAC24H6.06 |sld3|mug175|DNA replication pre-initiation complex ...    23   7.0  
SPBP26C9.03c |||iron ion transporter |Schizosaccharomyces pombe|...    22   9.3  

>SPAC3H5.10 |rpl3202|rpl32-2, rpl32|60S ribosomal protein
           L32|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 127

 Score = 29.9 bits (64), Expect = 0.046
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +2

Query: 113 KRGRKDLVRHQSDRYDRLNRNWR 181
           K+  K   RHQSDR+ R+  +WR
Sbjct: 8   KKRTKPFKRHQSDRFKRVGESWR 30


>SPBC16C6.11 |rpl3201|rpl32-1|60S ribosomal protein
           L32|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 127

 Score = 27.1 bits (57), Expect = 0.33
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +2

Query: 113 KRGRKDLVRHQSDRYDRLNRNWR 181
           K+  K   RHQSD + R+  +WR
Sbjct: 8   KKRTKPFKRHQSDLFKRVGESWR 30


>SPBC651.08c |rpc1||DNA-directed RNA polymerase III complex large
           subunit Rpc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1405

 Score = 24.2 bits (50), Expect = 2.3
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -1

Query: 188 RFSASSC*VYHNDPTGDELNLFV 120
           RF+   C  Y+ D  GDE+NL V
Sbjct: 481 RFNECVCGPYNADFDGDEMNLHV 503


>SPBC14F5.07 |||ER-localized ubiquitin ligase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1242

 Score = 23.4 bits (48), Expect = 4.0
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = -2

Query: 184 LAPVPVKSIITIRLVTN*IFSSSFGRLS 101
           L  +P+ S + ++L    IFSSSF ++S
Sbjct: 519 LTKLPLLSTVFVKLKLQGIFSSSFQQVS 546


>SPBC31E1.06 |bms1|SPBC800.01|GTP binding protein
            Bms1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1121

 Score = 23.0 bits (47), Expect = 5.3
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = +1

Query: 79   AIRPVYRPTIVQKRT 123
            A+RP  +PT +QKRT
Sbjct: 1023 ALRPRSKPTYMQKRT 1037


>SPBC12C2.13c |fnx1|SPBC21D10.04c|MFS multidrug efflux
           transporter|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 531

 Score = 23.0 bits (47), Expect = 5.3
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -2

Query: 160 IITIRLVTN*IFSSSFGRLS 101
           I+T  L+TN  F   +GRLS
Sbjct: 71  IVTAYLITNTAFQPLYGRLS 90


>SPBC1773.15 |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 497

 Score = 22.6 bits (46), Expect = 7.0
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = -1

Query: 137 ELNLFVLFWTIVGL*TGLIAILN 69
           E NL +  W I+ + TGLI I+N
Sbjct: 205 ENNLTMSPWRILFIITGLITIIN 227


>SPAC664.15 |||CCR4-Not complex subunit Caf4/Mdv1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 651

 Score = 22.6 bits (46), Expect = 7.0
 Identities = 10/35 (28%), Positives = 18/35 (51%)
 Frame = +3

Query: 21  RAVSPRGSRAACLSEII*NGYQTCLQTDNRPKEDE 125
           RA+SPR  R +  SE++ + ++        P+  E
Sbjct: 278 RAISPRAPRPSTASEVVSDYFEQNSAFSKAPENTE 312


>SPAC24H6.06 |sld3|mug175|DNA replication pre-initiation complex
           subunit Sld3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 668

 Score = 22.6 bits (46), Expect = 7.0
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = -3

Query: 99  SVNRSDSHFKLFH*DTRHVNHAVTR 25
           S+ RSDS F  F  DTR  +  + R
Sbjct: 493 SLTRSDSSFNGFERDTRRRSSDIAR 517


>SPBP26C9.03c |||iron ion transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 584

 Score = 22.2 bits (45), Expect = 9.3
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = -1

Query: 116 FWTIVGL*TGLIAILNYF 63
           +W I+G  TGL+  L+ F
Sbjct: 420 WWLIIGTYTGLVGFLDGF 437


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 752,342
Number of Sequences: 5004
Number of extensions: 10699
Number of successful extensions: 35
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 35
length of database: 2,362,478
effective HSP length: 43
effective length of database: 2,147,306
effective search space used: 40798814
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)