Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0024_K12
         (188 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X03342-1|CAA27048.1|  135|Homo sapiens protein ( Human mRNA for ...    36   0.023
BC070209-1|AAH70209.1|  135|Homo sapiens ribosomal protein L32 p...    36   0.023
BC011514-1|AAH11514.1|  135|Homo sapiens ribosomal protein L32 p...    36   0.023
AB061831-1|BAB79469.1|  135|Homo sapiens ribosomal protein L32 p...    36   0.023

>X03342-1|CAA27048.1|  135|Homo sapiens protein ( Human mRNA for
           ribosomal protein L32. ).
          Length = 135

 Score = 35.9 bits (79), Expect = 0.023
 Identities = 13/23 (56%), Positives = 17/23 (73%)
 Frame = +2

Query: 113 KRGRKDLVRHQSDRYDRLNRNWR 181
           K+  K  +RHQSDRY ++ RNWR
Sbjct: 14  KKRTKKFIRHQSDRYVKIKRNWR 36



 Score = 29.5 bits (63), Expect = 2.0
 Identities = 11/18 (61%), Positives = 16/18 (88%)
 Frame = +1

Query: 79  AIRPVYRPTIVQKRTKRF 132
           A+RP+ +P IV+KRTK+F
Sbjct: 3   ALRPLVKPKIVKKRTKKF 20


>BC070209-1|AAH70209.1|  135|Homo sapiens ribosomal protein L32
           protein.
          Length = 135

 Score = 35.9 bits (79), Expect = 0.023
 Identities = 13/23 (56%), Positives = 17/23 (73%)
 Frame = +2

Query: 113 KRGRKDLVRHQSDRYDRLNRNWR 181
           K+  K  +RHQSDRY ++ RNWR
Sbjct: 14  KKRTKKFIRHQSDRYVKIKRNWR 36



 Score = 29.5 bits (63), Expect = 2.0
 Identities = 11/18 (61%), Positives = 16/18 (88%)
 Frame = +1

Query: 79  AIRPVYRPTIVQKRTKRF 132
           A+RP+ +P IV+KRTK+F
Sbjct: 3   ALRPLVKPKIVKKRTKKF 20


>BC011514-1|AAH11514.1|  135|Homo sapiens ribosomal protein L32
           protein.
          Length = 135

 Score = 35.9 bits (79), Expect = 0.023
 Identities = 13/23 (56%), Positives = 17/23 (73%)
 Frame = +2

Query: 113 KRGRKDLVRHQSDRYDRLNRNWR 181
           K+  K  +RHQSDRY ++ RNWR
Sbjct: 14  KKRTKKFIRHQSDRYVKIKRNWR 36



 Score = 29.5 bits (63), Expect = 2.0
 Identities = 11/18 (61%), Positives = 16/18 (88%)
 Frame = +1

Query: 79  AIRPVYRPTIVQKRTKRF 132
           A+RP+ +P IV+KRTK+F
Sbjct: 3   ALRPLVKPKIVKKRTKKF 20


>AB061831-1|BAB79469.1|  135|Homo sapiens ribosomal protein L32
           protein.
          Length = 135

 Score = 35.9 bits (79), Expect = 0.023
 Identities = 13/23 (56%), Positives = 17/23 (73%)
 Frame = +2

Query: 113 KRGRKDLVRHQSDRYDRLNRNWR 181
           K+  K  +RHQSDRY ++ RNWR
Sbjct: 14  KKRTKKFIRHQSDRYVKIKRNWR 36



 Score = 29.5 bits (63), Expect = 2.0
 Identities = 11/18 (61%), Positives = 16/18 (88%)
 Frame = +1

Query: 79  AIRPVYRPTIVQKRTKRF 132
           A+RP+ +P IV+KRTK+F
Sbjct: 3   ALRPLVKPKIVKKRTKKF 20


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,334,930
Number of Sequences: 237096
Number of extensions: 354336
Number of successful extensions: 607
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 584
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 607
length of database: 76,859,062
effective HSP length: 42
effective length of database: 66,901,030
effective search space used: 1338020600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)