Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0024_K12
         (188 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF441189-1|AAL73401.1|  134|Apis mellifera ribosomal protein 49 ...    40   2e-06
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    23   0.44 
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    21   1.3  
DQ435331-1|ABD92646.1|  135|Apis mellifera OBP14 protein.              21   1.8  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    20   2.3  
AY526236-1|AAS20469.1|   85|Apis mellifera epoxide hydrolase pro...    20   3.1  
DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.    19   7.2  
AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            19   7.2  
AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc fi...    18   9.5  

>AF441189-1|AAL73401.1|  134|Apis mellifera ribosomal protein 49
           protein.
          Length = 134

 Score = 40.3 bits (90), Expect = 2e-06
 Identities = 17/19 (89%), Positives = 19/19 (100%)
 Frame = +1

Query: 76  MAIRPVYRPTIVQKRTKRF 132
           MAIRPVYRPTIV+KRTK+F
Sbjct: 1   MAIRPVYRPTIVKKRTKKF 19



 Score = 37.9 bits (84), Expect = 1e-05
 Identities = 14/23 (60%), Positives = 17/23 (73%)
 Frame = +2

Query: 113 KRGRKDLVRHQSDRYDRLNRNWR 181
           K+  K  +RHQSDRY +L RNWR
Sbjct: 13  KKRTKKFIRHQSDRYSKLKRNWR 35


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 22.6 bits (46), Expect = 0.44
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = -2

Query: 169 VKSIITIRLVTN*IFSSSFGRLSVC 95
           + S+  I  V   +F +SFG L++C
Sbjct: 462 INSVSYIDKVARIVFPASFGLLNIC 486


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 21.0 bits (42), Expect = 1.3
 Identities = 8/23 (34%), Positives = 14/23 (60%)
 Frame = -3

Query: 102 RSVNRSDSHFKLFH*DTRHVNHA 34
           R  +R  ++  ++H D  HV+HA
Sbjct: 262 RRDSRRKNYGGVYHLDNHHVHHA 284


>DQ435331-1|ABD92646.1|  135|Apis mellifera OBP14 protein.
          Length = 135

 Score = 20.6 bits (41), Expect = 1.8
 Identities = 6/20 (30%), Positives = 12/20 (60%)
 Frame = -3

Query: 129 SFRPLLDDCRSVNRSDSHFK 70
           S + L+ DC +++  + H K
Sbjct: 96  SVKQLVSDCSTISEENPHLK 115


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 20.2 bits (40), Expect = 2.3
 Identities = 8/30 (26%), Positives = 14/30 (46%)
 Frame = -1

Query: 164 VYHNDPTGDELNLFVLFWTIVGL*TGLIAI 75
           VYH     +  N+F++   +  L  GL  +
Sbjct: 90  VYHTSKLRNVTNMFIVSLAVADLMVGLAVL 119


>AY526236-1|AAS20469.1|   85|Apis mellifera epoxide hydrolase
           protein.
          Length = 85

 Score = 19.8 bits (39), Expect = 3.1
 Identities = 8/12 (66%), Positives = 8/12 (66%)
 Frame = -1

Query: 134 LNLFVLFWTIVG 99
           LNL  LFW  VG
Sbjct: 32  LNLSNLFWLFVG 43


>DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.
          Length = 471

 Score = 18.6 bits (36), Expect = 7.2
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = -1

Query: 107 IVGL*TGLIAILNY 66
           IVG   GL+++L Y
Sbjct: 299 IVGALAGLLSVLGY 312


>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 18.6 bits (36), Expect = 7.2
 Identities = 6/6 (100%), Positives = 6/6 (100%)
 Frame = +2

Query: 65  NNLKWL 82
           NNLKWL
Sbjct: 281 NNLKWL 286


>AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc
          finger domain-Z1 isoform protein.
          Length = 111

 Score = 18.2 bits (35), Expect = 9.5
 Identities = 6/11 (54%), Positives = 8/11 (72%)
 Frame = -3

Query: 51 RHVNHAVTRPS 19
          RH+ +  TRPS
Sbjct: 20 RHIQNVHTRPS 30


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 51,115
Number of Sequences: 438
Number of extensions: 723
Number of successful extensions: 10
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 42
effective length of database: 127,947
effective search space used:  2558940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.9 bits)