Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0024_K10
         (300 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                23   0.81 
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    23   1.1  
EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    22   1.4  
DQ288392-1|ABC41342.1|  120|Apis mellifera nanos protein.              22   1.9  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    20   5.7  
AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter...    20   5.7  

>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 23.0 bits (47), Expect = 0.81
 Identities = 14/45 (31%), Positives = 17/45 (37%)
 Frame = -2

Query: 227 PPSCHSTL*WPRSRHPSRPNVRSHSYARYRTRPPSRTSGTARGPP 93
           PPS H     P   HP R +   H +  +       T G   GPP
Sbjct: 313 PPSYHPHQHHPSQYHPHRGSSPHHQHGNH-------TMGPTMGPP 350


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 22.6 bits (46), Expect = 1.1
 Identities = 6/11 (54%), Positives = 8/11 (72%)
 Frame = -3

Query: 247 HLHGLPVHHHA 215
           H+H  P HHH+
Sbjct: 425 HIHATPHHHHS 435


>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
           protein.
          Length = 1010

 Score = 22.2 bits (45), Expect = 1.4
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = +2

Query: 200 IKELNGMMVDGQPMKVQLSTSR 265
           ++ LNG+   G+P  +QL + R
Sbjct: 315 LRGLNGLEFAGRPQNLQLQSQR 336


>DQ288392-1|ABC41342.1|  120|Apis mellifera nanos protein.
          Length = 120

 Score = 21.8 bits (44), Expect = 1.9
 Identities = 17/64 (26%), Positives = 26/64 (40%)
 Frame = +2

Query: 14  RHEGRKAPSTPTTKIFVGNLTDKTRAPEVRELFQKFGTVVECDIVRNYGFVHLDATGDVN 193
           R +  K P  PT  +F  N   +  A   + L +     V C ++R Y      A GD+ 
Sbjct: 28  RRKKNKKP-LPTECVFCRN-NGEEEAYYRKHLLKDADGRVSCPVLRAYTCPICGACGDIA 85

Query: 194 EAIK 205
             +K
Sbjct: 86  HTVK 89


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 20.2 bits (40), Expect = 5.7
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = +2

Query: 59  FVGNLTDKTRAP 94
           F+GNL  +TR P
Sbjct: 479 FMGNLLQETRTP 490


>AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter
           Am-EAAT protein.
          Length = 543

 Score = 20.2 bits (40), Expect = 5.7
 Identities = 9/24 (37%), Positives = 12/24 (50%)
 Frame = +2

Query: 41  TPTTKIFVGNLTDKTRAPEVRELF 112
           TP   I      D+T APE  ++F
Sbjct: 516 TPLENILESCQQDETHAPEKTKIF 539


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 88,601
Number of Sequences: 438
Number of extensions: 1858
Number of successful extensions: 9
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 49
effective length of database: 124,881
effective search space used:  6244050
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)