Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0024_K09
         (173 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCP31B10.07 |eft202||translation elongation factor 2 |Schizosac...    37   3e-04
SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation elon...    37   3e-04
SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyce...    25   1.3  
SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|c...    24   3.1  
SPAC22G7.04 |ubp13|pan2|poly|Schizosaccharomyces pombe|chr 1|||M...    23   5.4  
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual        22   9.4  
SPBC3B9.15c |scp1||sterol regulatory element binding protein Scp...    22   9.4  
SPAC1805.14 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    22   9.4  

>SPCP31B10.07 |eft202||translation elongation factor 2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 842

 Score = 37.1 bits (82), Expect = 3e-04
 Identities = 16/17 (94%), Positives = 17/17 (100%)
 Frame = +2

Query: 5   DLPKLVEGLKRLAKSDP 55
           DLPKLVEGLKRL+KSDP
Sbjct: 500 DLPKLVEGLKRLSKSDP 516


>SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation
           elongation factor 2 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 842

 Score = 37.1 bits (82), Expect = 3e-04
 Identities = 16/17 (94%), Positives = 17/17 (100%)
 Frame = +2

Query: 5   DLPKLVEGLKRLAKSDP 55
           DLPKLVEGLKRL+KSDP
Sbjct: 500 DLPKLVEGLKRLSKSDP 516


>SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 983

 Score = 25.0 bits (52), Expect = 1.3
 Identities = 9/19 (47%), Positives = 16/19 (84%)
 Frame = +2

Query: 2   ADLPKLVEGLKRLAKSDPI 58
           ++LPKL++GL++  KS P+
Sbjct: 611 SELPKLLDGLRKTNKSYPL 629


>SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1687

 Score = 23.8 bits (49), Expect = 3.1
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = +2

Query: 8    LPKLVEGLKRLAKSDPIGAV 67
            LP L++ +KRL  SDP G +
Sbjct: 1468 LPPLIDLVKRLITSDPEGVL 1487


>SPAC22G7.04 |ubp13|pan2|poly|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1115

 Score = 23.0 bits (47), Expect = 5.4
 Identities = 9/16 (56%), Positives = 9/16 (56%)
 Frame = +2

Query: 83  WRTHLSPCAVRSMQFL 130
           WR H  PC  RSM  L
Sbjct: 92  WRYHSVPCVQRSMIIL 107


>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 4717

 Score = 22.2 bits (45), Expect = 9.4
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = +1

Query: 34   ASRQIRPYRCSASTKSLANTFVAVCRAKY 120
            ASR     + S+ T SLAN+FV +    Y
Sbjct: 2962 ASRLCSEKQHSSDTHSLANSFVLLANEFY 2990


>SPBC3B9.15c |scp1||sterol regulatory element binding protein
           Scp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1086

 Score = 22.2 bits (45), Expect = 9.4
 Identities = 8/26 (30%), Positives = 15/26 (57%)
 Frame = +2

Query: 11  PKLVEGLKRLAKSDPIGAVHQRRVWR 88
           P +++ + R   ++   + H RRVWR
Sbjct: 517 PVILDTVNRRDYTNVYNSFHDRRVWR 542


>SPAC1805.14 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 452

 Score = 22.2 bits (45), Expect = 9.4
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = -2

Query: 133 LQELHTSHGTRRQMCSPDSSLMH 65
           L + HT+H T     + DS L+H
Sbjct: 336 LSQRHTNHSTDHHDDTVDSHLLH 358


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.315    0.125    0.355 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 764,140
Number of Sequences: 5004
Number of extensions: 10944
Number of successful extensions: 32
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 32
length of database: 2,362,478
effective HSP length: 38
effective length of database: 2,172,326
effective search space used: 41274194
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)