Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0024_K09
         (173 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_01_0103 + 1082077-1082167,1083037-1085477                           39   5e-04
02_04_0017 + 18937774-18937864,18938505-18940945                       39   5e-04
01_06_0662 + 30987187-30987277,30987825-30990214                       39   5e-04
01_06_0548 - 30137139-30139196,30139279-30139691,30139822-30139912     38   0.001
05_04_0166 + 18664609-18664890                                         29   0.40 
06_03_0715 - 23823427-23823525,23823616-23823822,23823907-238240...    29   0.53 
12_02_0289 - 16914975-16916238,16916246-16916484                       27   1.6  
06_01_0501 - 3587390-3587528,3587922-3588031,3588122-3588187,358...    25   8.6  
01_05_0694 - 24347642-24348246,24349915-24349993,24350473-243506...    25   8.6  

>04_01_0103 + 1082077-1082167,1083037-1085477
          Length = 843

 Score = 39.1 bits (87), Expect = 5e-04
 Identities = 17/19 (89%), Positives = 19/19 (100%)
 Frame = +2

Query: 2   ADLPKLVEGLKRLAKSDPI 58
           +DLPKLVEGLKRLAKSDP+
Sbjct: 499 SDLPKLVEGLKRLAKSDPM 517


>02_04_0017 + 18937774-18937864,18938505-18940945
          Length = 843

 Score = 39.1 bits (87), Expect = 5e-04
 Identities = 17/19 (89%), Positives = 19/19 (100%)
 Frame = +2

Query: 2   ADLPKLVEGLKRLAKSDPI 58
           +DLPKLVEGLKRLAKSDP+
Sbjct: 499 SDLPKLVEGLKRLAKSDPM 517


>01_06_0662 + 30987187-30987277,30987825-30990214
          Length = 826

 Score = 39.1 bits (87), Expect = 5e-04
 Identities = 17/19 (89%), Positives = 19/19 (100%)
 Frame = +2

Query: 2   ADLPKLVEGLKRLAKSDPI 58
           +DLPKLVEGLKRLAKSDP+
Sbjct: 495 SDLPKLVEGLKRLAKSDPM 513


>01_06_0548 - 30137139-30139196,30139279-30139691,30139822-30139912
          Length = 853

 Score = 37.9 bits (84), Expect = 0.001
 Identities = 16/19 (84%), Positives = 19/19 (100%)
 Frame = +2

Query: 2   ADLPKLVEGLKRLAKSDPI 58
           ++LPKLVEGLKRLAKSDP+
Sbjct: 501 SELPKLVEGLKRLAKSDPL 519


>05_04_0166 + 18664609-18664890
          Length = 93

 Score = 29.5 bits (63), Expect = 0.40
 Identities = 13/24 (54%), Positives = 18/24 (75%)
 Frame = +1

Query: 1  RRPAQAGGRSEASRQIRPYRCSAS 72
          RRPAQ+  R EA+ + R +RCSA+
Sbjct: 26 RRPAQSWRRGEAAVEERQWRCSAA 49


>06_03_0715 -
           23823427-23823525,23823616-23823822,23823907-23824017,
           23824124-23824322,23824410-23824495,23824940-23825098,
           23825204-23825302,23825385-23826578,23826666-23826734,
           23828042-23828812
          Length = 997

 Score = 29.1 bits (62), Expect = 0.53
 Identities = 10/19 (52%), Positives = 18/19 (94%)
 Frame = +2

Query: 2   ADLPKLVEGLKRLAKSDPI 58
           ++LPK+VEGL++++KS P+
Sbjct: 622 SELPKMVEGLRKISKSYPL 640


>12_02_0289 - 16914975-16916238,16916246-16916484
          Length = 500

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 11/37 (29%), Positives = 19/37 (51%)
 Frame = -2

Query: 163 PHSEIP*DQYLQELHTSHGTRRQMCSPDSSLMHCTYR 53
           P+ +I   +Y+    T H  RR +C P+  ++ C  R
Sbjct: 50  PYEQITVSEYIA---TEHAVRRHLCLPEKRVLGCKLR 83


>06_01_0501 -
           3587390-3587528,3587922-3588031,3588122-3588187,
           3588293-3588410,3588499-3588554,3588647-3588766,
           3588937-3589035,3589443-3589490,3589534-3589545,
           3590353-3590418,3591412-3591471,3592061-3592162,
           3592405-3592426,3592959-3593041,3593166-3593293,
           3593775-3593881,3594376-3594845
          Length = 601

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 10/37 (27%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
 Frame = +3

Query: 51  TL*VQCINEESG-EHICRRVPCEVCSS*RYWSQGISE 158
           T+   C++   G +++C R PCE       W   ++E
Sbjct: 245 TIRTMCLSNHPGLDNVCTRKPCEQSMGGILWFHNLTE 281


>01_05_0694 -
           24347642-24348246,24349915-24349993,24350473-24350607,
           24351486-24351578,24351801-24351926,24352285-24352332,
           24352552-24352653,24353234-24353317,24353754-24353825,
           24354136-24354292,24354520-24354563,24354806-24354918,
           24355252-24355368,24356330-24356399
          Length = 614

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 5/37 (13%)
 Frame = +1

Query: 10  AQAGGRSEASRQIRPY-----RCSASTKSLANTFVAV 105
           A AGGR    +  RPY      C+A + S +++ VAV
Sbjct: 469 ASAGGRLSTDKSYRPYDGEKGTCAAGSGSASSSSVAV 505


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.315    0.125    0.355 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,499,228
Number of Sequences: 37544
Number of extensions: 85398
Number of successful extensions: 265
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 259
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 265
length of database: 14,793,348
effective HSP length: 37
effective length of database: 13,404,220
effective search space used: 268084400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)