Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0024_K07
         (145 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyce...    23   4.2  
SPAC3H5.06c |pol1|swi7, polA|DNA polymerase alpha catalytic subu...    23   5.5  
SPCC1183.07 |||U3 snoRNP-associated protein Rrp5|Schizosaccharom...    23   5.5  
SPAC56F8.12 |||conserved fungal protein|Schizosaccharomyces pomb...    23   7.3  
SPAC1805.17 |crm1|caf2, SPAC1B2.01|nuclear export receptor Crm1|...    23   7.3  
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce...    23   7.3  
SPBC11C11.04c |alp1||tubulin specific chaperone cofactor D |Schi...    22   9.6  
SPCC16C4.09 |sts5|orb4|RNB-like protein|Schizosaccharomyces pomb...    22   9.6  
SPAC23H4.13c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual       22   9.6  

>SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1347

 Score = 23.4 bits (48), Expect = 4.2
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = +2

Query: 41  LSILVHNLYIFIFVSPLIFDIFFEQLSTSLS 133
           ++IL+H LY    +SP   D  F  L  +LS
Sbjct: 682 VAILLHYLYTDTLLSPWHLDSRFSPLKENLS 712


>SPAC3H5.06c |pol1|swi7, polA|DNA polymerase alpha catalytic subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1405

 Score = 23.0 bits (47), Expect = 5.5
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = +2

Query: 32  HKLLSILVHNLYIFIFVSPLIFDIFFEQLSTSLS 133
           H LL  LVH      F++ + F I   QLS +L+
Sbjct: 726 HGLLDYLVHCEIDTFFIAAVAFKIQMLQLSKNLT 759


>SPCC1183.07 |||U3 snoRNP-associated protein
           Rrp5|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1690

 Score = 23.0 bits (47), Expect = 5.5
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = -2

Query: 132 DKDVESCSKNISKIRGDTNM 73
           D D+  CSK ++K+R  T +
Sbjct: 700 DGDLNKCSKVMNKLRASTKL 719


>SPAC56F8.12 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 394

 Score = 22.6 bits (46), Expect = 7.3
 Identities = 9/33 (27%), Positives = 19/33 (57%)
 Frame = +2

Query: 8   KQLIIQIKHKLLSILVHNLYIFIFVSPLIFDIF 106
           +Q I+  KH     L H +++  + +P++F +F
Sbjct: 162 RQRIVVGKHAAHFSLDHWIFVVEYYAPIVFYVF 194


>SPAC1805.17 |crm1|caf2, SPAC1B2.01|nuclear export receptor
           Crm1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1078

 Score = 22.6 bits (46), Expect = 7.3
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = +2

Query: 17  IIQIKHKLLSILVHNLYIFIFVSPLIFDIFFEQLS 121
           I+Q     LS+  +N+ +   +S  IFD   EQ++
Sbjct: 141 IVQASKTNLSLCENNMIVLRLLSEEIFDYSAEQMT 175


>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1957

 Score = 22.6 bits (46), Expect = 7.3
 Identities = 8/21 (38%), Positives = 14/21 (66%)
 Frame = -2

Query: 144 ILKMDKDVESCSKNISKIRGD 82
           ++K  +DV+S  KNI  ++ D
Sbjct: 677 LIKKQEDVDSLEKNIQTLKED 697


>SPBC11C11.04c |alp1||tubulin specific chaperone cofactor D
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1107

 Score = 22.2 bits (45), Expect = 9.6
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = +3

Query: 63  FTSSYLYRPLSLIYFLSSFQRLCP 134
           F  S  Y+ +  ++ LSSF ++CP
Sbjct: 209 FKRSIFYK-IGCLFSLSSFLKICP 231


>SPCC16C4.09 |sts5|orb4|RNB-like protein|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1066

 Score = 22.2 bits (45), Expect = 9.6
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = +2

Query: 77   FVSPLIFDIFFEQL 118
            FV+P  FD+FF  L
Sbjct: 989  FVAPSYFDVFFPSL 1002


>SPAC23H4.13c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 184

 Score = 22.2 bits (45), Expect = 9.6
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +2

Query: 20 IQIKHKLLSILVHNLYIF 73
          IQ+   LLS L++ LY F
Sbjct: 28 IQVSSSLLSFLIYILYTF 45


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 543,039
Number of Sequences: 5004
Number of extensions: 7068
Number of successful extensions: 37
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 37
length of database: 2,362,478
effective HSP length: 28
effective length of database: 2,222,366
effective search space used: 42224954
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)