Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0024_K07
(145 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL132898-3|CAC14412.1| 346|Caenorhabditis elegans Hypothetical ... 28 0.79
AF024492-8|AAF98620.1| 336|Caenorhabditis elegans Serpentine re... 27 1.4
Z81457-5|CAB03817.2| 584|Caenorhabditis elegans Hypothetical pr... 26 3.2
Z14092-11|CAI46627.1| 817|Caenorhabditis elegans Hypothetical p... 26 3.2
Z14092-5|CAD45600.1| 816|Caenorhabditis elegans Hypothetical pr... 26 3.2
Z14092-4|CAD45599.1| 820|Caenorhabditis elegans Hypothetical pr... 26 3.2
Z14092-3|CAA78473.3| 754|Caenorhabditis elegans Hypothetical pr... 26 3.2
U41104-5|AAK18976.3| 1564|Caenorhabditis elegans Twik family of ... 26 4.2
AF003132-2|AAB54134.2| 568|Caenorhabditis elegans Hypothetical ... 26 4.2
AF003140-6|AAD47122.2| 1145|Caenorhabditis elegans Hypothetical ... 25 7.3
Z98860-1|CAB11544.1| 677|Caenorhabditis elegans Hypothetical pr... 25 9.7
>AL132898-3|CAC14412.1| 346|Caenorhabditis elegans Hypothetical
protein Y59A8B.4 protein.
Length = 346
Score = 28.3 bits (60), Expect = 0.79
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = +2
Query: 17 IIQIKHKLLSILVHNLYIFIFVSPLIF 97
I + K +LL I++H Y F F PL+F
Sbjct: 131 IFKTKGRLLYIVLHYTYAFCFTLPLLF 157
>AF024492-8|AAF98620.1| 336|Caenorhabditis elegans Serpentine
receptor, class h protein130 protein.
Length = 336
Score = 27.5 bits (58), Expect = 1.4
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = +2
Query: 17 IIQIKHKLLSILVHNLYIFIFVSPLIF 97
+IQ K +L I H +Y FIF+ P+ F
Sbjct: 131 LIQEKQRLAYIGGHYIYAFIFILPITF 157
>Z81457-5|CAB03817.2| 584|Caenorhabditis elegans Hypothetical
protein C01G12.7 protein.
Length = 584
Score = 26.2 bits (55), Expect = 3.2
Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 6/41 (14%)
Frame = +2
Query: 41 LSILVHNLYIFIFVSPLI------FDIFFEQLSTSLSIFRI 145
LSIL+ L IF +SPL+ F + F L+T +++ I
Sbjct: 342 LSILLPQLLIFFCISPLLSVAAWHFGVLFSTLATPIAVILI 382
>Z14092-11|CAI46627.1| 817|Caenorhabditis elegans Hypothetical
protein R107.4d protein.
Length = 817
Score = 26.2 bits (55), Expect = 3.2
Identities = 13/36 (36%), Positives = 22/36 (61%), Gaps = 3/36 (8%)
Frame = -2
Query: 138 KMDKDVESCSKNISKIRGD---TNMKM*RLCTKIES 40
K+ D+E+C+K +SK D +M + +C +IES
Sbjct: 543 KVSMDIEACAKQLSKDAEDLRLEDMDLPGICEEIES 578
>Z14092-5|CAD45600.1| 816|Caenorhabditis elegans Hypothetical
protein R107.4c protein.
Length = 816
Score = 26.2 bits (55), Expect = 3.2
Identities = 13/36 (36%), Positives = 22/36 (61%), Gaps = 3/36 (8%)
Frame = -2
Query: 138 KMDKDVESCSKNISKIRGD---TNMKM*RLCTKIES 40
K+ D+E+C+K +SK D +M + +C +IES
Sbjct: 543 KVSMDIEACAKQLSKDAEDLRLEDMDLPGICEEIES 578
>Z14092-4|CAD45599.1| 820|Caenorhabditis elegans Hypothetical
protein R107.4b protein.
Length = 820
Score = 26.2 bits (55), Expect = 3.2
Identities = 13/36 (36%), Positives = 22/36 (61%), Gaps = 3/36 (8%)
Frame = -2
Query: 138 KMDKDVESCSKNISKIRGD---TNMKM*RLCTKIES 40
K+ D+E+C+K +SK D +M + +C +IES
Sbjct: 543 KVSMDIEACAKQLSKDAEDLRLEDMDLPGICEEIES 578
>Z14092-3|CAA78473.3| 754|Caenorhabditis elegans Hypothetical
protein R107.4a protein.
Length = 754
Score = 26.2 bits (55), Expect = 3.2
Identities = 13/36 (36%), Positives = 22/36 (61%), Gaps = 3/36 (8%)
Frame = -2
Query: 138 KMDKDVESCSKNISKIRGD---TNMKM*RLCTKIES 40
K+ D+E+C+K +SK D +M + +C +IES
Sbjct: 543 KVSMDIEACAKQLSKDAEDLRLEDMDLPGICEEIES 578
>U41104-5|AAK18976.3| 1564|Caenorhabditis elegans Twik family of
potassium channelsprotein 2 protein.
Length = 1564
Score = 25.8 bits (54), Expect = 4.2
Identities = 13/45 (28%), Positives = 23/45 (51%)
Frame = -2
Query: 138 KMDKDVESCSKNISKIRGDTNMKM*RLCTKIESSLCFICIINCFK 4
K K+V+ C+KN+ K+ + ++C K + +C C N K
Sbjct: 1273 KCAKNVQKCAKNVQKMCKKCAKNVQKMCKKC-AKMCKKCAKNVQK 1316
>AF003132-2|AAB54134.2| 568|Caenorhabditis elegans Hypothetical
protein F37E3.2 protein.
Length = 568
Score = 25.8 bits (54), Expect = 4.2
Identities = 15/46 (32%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
Frame = +2
Query: 2 PLKQLIIQIKHKLLSILVHNLYIFIFVSPLIF--DIFFEQLSTSLS 133
P+ QL KL L+ NL+ +FVSP + D+ + Q+++ S
Sbjct: 211 PVAQLPAVKSLKLSHNLIENLHRLLFVSPFLIHVDLSYNQITSFAS 256
>AF003140-6|AAD47122.2| 1145|Caenorhabditis elegans Hypothetical
protein C44E4.7 protein.
Length = 1145
Score = 25.0 bits (52), Expect = 7.3
Identities = 9/20 (45%), Positives = 13/20 (65%), Gaps = 1/20 (5%)
Frame = -2
Query: 57 CTKIESS-LCFICIINCFKG 1
C +ES +C +C INC +G
Sbjct: 814 CNMMESEGVCSVCAINCHRG 833
>Z98860-1|CAB11544.1| 677|Caenorhabditis elegans Hypothetical
protein Y26G10.1 protein.
Length = 677
Score = 24.6 bits (51), Expect = 9.7
Identities = 10/19 (52%), Positives = 15/19 (78%)
Frame = +2
Query: 17 IIQIKHKLLSILVHNLYIF 73
++ + +LLS+LVH LYIF
Sbjct: 56 VLYLLVQLLSVLVHFLYIF 74
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,920,807
Number of Sequences: 27780
Number of extensions: 38442
Number of successful extensions: 170
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 165
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 170
length of database: 12,740,198
effective HSP length: 28
effective length of database: 11,962,358
effective search space used: 227284802
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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