Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0024_K06
         (167 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomy...    25   1.3  
SPAPB24D3.08c |||NADP-dependent oxidoreductase |Schizosaccharomy...    24   2.3  
SPCC417.09c |||transcription factor |Schizosaccharomyces pombe|c...    24   3.1  
SPBC25H2.16c |||adaptin|Schizosaccharomyces pombe|chr 2|||Manual       23   5.4  
SPAC4G9.04c |||cleavage and polyadenylation specificity factor |...    23   7.1  

>SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2052

 Score = 25.0 bits (52), Expect = 1.3
 Identities = 11/36 (30%), Positives = 21/36 (58%)
 Frame = -3

Query: 126  NLLHYIDLLIVIERRKFVFENVQVVEISPMLTDIVI 19
            N+L+Y+ L  + E  K +   ++VV  S ++ D+ I
Sbjct: 1727 NILYYVKLFYLSEICKTIISMIKVVADSSVVPDLTI 1762


>SPAPB24D3.08c |||NADP-dependent oxidoreductase
          |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 349

 Score = 24.2 bits (50), Expect = 2.3
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = -3

Query: 99 IVIERRKFVFENVQVVEISPML 34
          +  E+R+F  EN QV E +P+L
Sbjct: 26 LAFEKREFDLENAQVDEETPVL 47


>SPCC417.09c |||transcription factor |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 767

 Score = 23.8 bits (49), Expect = 3.1
 Identities = 9/26 (34%), Positives = 18/26 (69%)
 Frame = -3

Query: 150 INHCFL*FNLLHYIDLLIVIERRKFV 73
           I++C+   + LH +DLL+++   KF+
Sbjct: 602 ISYCYS--SALHIVDLLVLLRMHKFL 625


>SPBC25H2.16c |||adaptin|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 533

 Score = 23.0 bits (47), Expect = 5.4
 Identities = 8/23 (34%), Positives = 14/23 (60%)
 Frame = +2

Query: 29  SVNIGDISTTCTFSNTNFRLSIT 97
           +V I + ++TC F N++    IT
Sbjct: 413 NVPINNFTSTCAFENSHLNFQIT 435


>SPAC4G9.04c |||cleavage and polyadenylation specificity factor
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 638

 Score = 22.6 bits (46), Expect = 7.1
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = +3

Query: 18  LLQYQSTSVIFQQPVHSQIRISAFQS 95
           LL+Y+ST +  Q P+ +   IS+F +
Sbjct: 134 LLKYKSTILRHQSPLLANTSISSFSA 159


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 635,771
Number of Sequences: 5004
Number of extensions: 8709
Number of successful extensions: 15
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 2,362,478
effective HSP length: 36
effective length of database: 2,182,334
effective search space used: 41464346
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)