Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0024_K06
         (167 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81473-6|CAB03895.2|  657|Caenorhabditis elegans Hypothetical pr...    25   5.4  
Z93391-2|CAB07681.1|  490|Caenorhabditis elegans Hypothetical pr...    25   7.2  

>Z81473-6|CAB03895.2|  657|Caenorhabditis elegans Hypothetical
           protein C17D12.7 protein.
          Length = 657

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = +2

Query: 41  GDISTTCTFSNTNFRLS 91
           G+ S  CTFS++ FRLS
Sbjct: 168 GEKSKNCTFSDSTFRLS 184


>Z93391-2|CAB07681.1|  490|Caenorhabditis elegans Hypothetical
           protein W04G5.4 protein.
          Length = 490

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 13/37 (35%), Positives = 21/37 (56%), Gaps = 8/37 (21%)
 Frame = +1

Query: 13  DFYYNISQHR*YFNNLYILKY--------EFPPFNHY 99
           +FY+N   H+ +F+ +YI KY          PPF++Y
Sbjct: 213 EFYWNPLSHQPHFDFVYIPKYLRDWFAMKVMPPFSNY 249


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,425,391
Number of Sequences: 27780
Number of extensions: 46710
Number of successful extensions: 110
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 110
length of database: 12,740,198
effective HSP length: 36
effective length of database: 11,740,118
effective search space used: 223062242
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)