Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0024_K06
         (167 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    19   4.2  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    19   4.2  
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    19   4.2  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                19   5.6  
AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II ...    19   5.6  
DQ435330-1|ABD92645.1|  132|Apis mellifera OBP13 protein.              18   9.7  
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    18   9.7  

>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 19.4 bits (38), Expect = 4.2
 Identities = 6/11 (54%), Positives = 10/11 (90%)
 Frame = -3

Query: 141 CFL*FNLLHYI 109
           CF+ FNL+++I
Sbjct: 415 CFVCFNLMYWI 425


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 19.4 bits (38), Expect = 4.2
 Identities = 6/11 (54%), Positives = 10/11 (90%)
 Frame = -3

Query: 141 CFL*FNLLHYI 109
           CF+ FNL+++I
Sbjct: 415 CFVCFNLMYWI 425


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 19.4 bits (38), Expect = 4.2
 Identities = 6/11 (54%), Positives = 10/11 (90%)
 Frame = -3

Query: 141 CFL*FNLLHYI 109
           CF+ FNL+++I
Sbjct: 353 CFVCFNLMYWI 363


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 19.0 bits (37), Expect = 5.6
 Identities = 6/12 (50%), Positives = 10/12 (83%)
 Frame = +1

Query: 52  NNLYILKYEFPP 87
           ++LY+L+  FPP
Sbjct: 419 DDLYLLELGFPP 430


>AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II
           protein.
          Length = 190

 Score = 19.0 bits (37), Expect = 5.6
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = +1

Query: 58  LYILKYEFPPF 90
           LYIL   +PPF
Sbjct: 102 LYILLVGYPPF 112


>DQ435330-1|ABD92645.1|  132|Apis mellifera OBP13 protein.
          Length = 132

 Score = 18.2 bits (35), Expect = 9.7
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = +2

Query: 98  INKSI*CNKLNHKKQ*FIENN 160
           I +S  C K +   Q FI+NN
Sbjct: 106 ITESNSCKKSSKLLQCFIDNN 126


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 18.2 bits (35), Expect = 9.7
 Identities = 7/18 (38%), Positives = 8/18 (44%)
 Frame = -3

Query: 165 GKLFSINHCFL*FNLLHY 112
           GK F  NH      + HY
Sbjct: 238 GKSFGYNHVLKLHQVAHY 255


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 44,758
Number of Sequences: 438
Number of extensions: 657
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 35
effective length of database: 131,013
effective search space used:  2620260
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.9 bits)