Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0024_K05
(187 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_02_0050 - 4596444-4596634,4596855-4597107 29 0.69
04_04_0036 - 22307328-22308026 27 2.1
06_03_0745 + 24109406-24109921 26 3.7
07_01_0733 + 5570084-5570282,5570395-5570600,5572484-5572624,557... 25 6.5
01_05_0597 - 23526705-23526749,23526794-23526905,23527068-235271... 25 6.5
06_01_0747 - 5587261-5587356,5587472-5587855,5588133-5588192,558... 25 8.5
04_03_0595 - 17749777-17750921,17752022-17752043 25 8.5
01_01_0282 - 2349336-2349583,2349719-2349786,2349880-2349950,235... 25 8.5
>10_02_0050 - 4596444-4596634,4596855-4597107
Length = 147
Score = 28.7 bits (61), Expect = 0.69
Identities = 15/22 (68%), Positives = 17/22 (77%)
Frame = +3
Query: 3 SARGDGGSLGSRVDEERS*LRV 68
S RG GG+ SRV+EERS LRV
Sbjct: 60 STRGGGGAKSSRVEEERS-LRV 80
>04_04_0036 - 22307328-22308026
Length = 232
Score = 27.1 bits (57), Expect = 2.1
Identities = 13/35 (37%), Positives = 17/35 (48%), Gaps = 2/35 (5%)
Frame = -3
Query: 164 RPSDRSGPGCVSTDRNVR--SKCRCSNVSCSSHYD 66
RP R G + +R V+ CRC+ C HYD
Sbjct: 113 RPLPRHGTTETAAERQVQRGGPCRCACNYCGGHYD 147
>06_03_0745 + 24109406-24109921
Length = 171
Score = 26.2 bits (55), Expect = 3.7
Identities = 13/34 (38%), Positives = 15/34 (44%), Gaps = 4/34 (11%)
Frame = -3
Query: 161 PSDRSGPGCVSTDRN----VRSKCRCSNVSCSSH 72
P R GP ST R CRC N+ C+ H
Sbjct: 103 PKGREGPNRCSTCRKRVGLTGFNCRCGNLYCAMH 136
>07_01_0733 +
5570084-5570282,5570395-5570600,5572484-5572624,
5572773-5572949,5573049-5573145,5573575-5573687,
5573774-5573896,5574004-5574075,5575340-5575432,
5575564-5575674,5575767-5575889,5576834-5576890,
5576939-5577022,5577140-5577214,5577418-5577554,
5577719-5577853,5579029-5579168,5579334-5579399,
5579732-5579838,5579910-5579990,5580064-5580138,
5580224-5580325,5581837-5582005,5582090-5582217,
5582596-5582679,5582779-5582879,5583729-5583882,
5583964-5584038,5584112-5584262,5584463-5585078,
5585427-5585487,5585874-5586019,5586104-5586287,
5586363-5586440,5586603-5586931,5587023-5587199,
5587571-5587667,5587742-5587897,5587962-5588198,
5588271-5588354,5588426-5588486,5588762-5588898
Length = 1912
Score = 25.4 bits (53), Expect = 6.5
Identities = 13/39 (33%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Frame = +2
Query: 56 LTARHS-VNCRTHLNIDISNAHCGPWRHIQDHSCLRAGC 169
L+A+ S +NC + + +IS H G H + + AGC
Sbjct: 725 LSAKQSLINCASDIPSEISQMHAGSVFHGYVCNIIEAGC 763
>01_05_0597 -
23526705-23526749,23526794-23526905,23527068-23527134,
23527439-23527566,23527638-23527750,23527827-23527972,
23528419-23528525,23528667-23528873,23530878-23531129,
23531324-23531406
Length = 419
Score = 25.4 bits (53), Expect = 6.5
Identities = 13/32 (40%), Positives = 15/32 (46%)
Frame = -3
Query: 152 RSGPGCVSTDRNVRSKCRCSNVSCSSHYDAQL 57
R GP T VR +CR +CS DA L
Sbjct: 7 RGGPRRSVTTEEVRGECRGGGSTCSCAADALL 38
>06_01_0747 - 5587261-5587356,5587472-5587855,5588133-5588192,
5588428-5588484,5588663-5588800,5588901-5588966,
5589234-5589452,5589522-5589737,5589813-5589884,
5589952-5590205,5590356-5590525,5590840-5591029,
5592211-5592331,5592838-5592921,5593003-5593365,
5594530-5594724,5594938-5595933,5596329-5596370
Length = 1240
Score = 25.0 bits (52), Expect = 8.5
Identities = 17/54 (31%), Positives = 25/54 (46%), Gaps = 3/54 (5%)
Frame = -3
Query: 167 SRPSDRSGPGCVSTDRNVRSKCRCSNVSCSSHYD---AQLTAFFIDPRAK*STV 15
S P D+ C RNV S +CS V C + A+ F++D + ST+
Sbjct: 976 SLPKDKDT--CAICHRNVGSCLKCSTVDCQITFHPTCARDAGFYMDTKTIGSTL 1027
>04_03_0595 - 17749777-17750921,17752022-17752043
Length = 388
Score = 25.0 bits (52), Expect = 8.5
Identities = 13/35 (37%), Positives = 17/35 (48%)
Frame = -2
Query: 168 QPALRQEWSWMCLHGPQCAFEMSMFKCVLQFTL*R 64
Q +RQ + HG Q +M C L+FTL R
Sbjct: 35 QRLIRQRDEYFQQHGGQLLSDMMKIDCNLEFTLYR 69
>01_01_0282 -
2349336-2349583,2349719-2349786,2349880-2349950,
2350022-2350123,2350309-2350449,2350540-2350716,
2352228-2352338
Length = 305
Score = 25.0 bits (52), Expect = 8.5
Identities = 11/19 (57%), Positives = 12/19 (63%)
Frame = +1
Query: 4 RHEGTVDHLARGSMKNAVN 60
RH GTV HLA G AV+
Sbjct: 4 RHIGTVAHLAAGGFAGAVS 22
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,024,172
Number of Sequences: 37544
Number of extensions: 100352
Number of successful extensions: 280
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 278
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 279
length of database: 14,793,348
effective HSP length: 41
effective length of database: 13,254,044
effective search space used: 265080880
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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