Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0024_K05
         (187 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF045642-10|AAC02587.1|  459|Caenorhabditis elegans Hypothetical...    27   1.3  
AC024831-12|AAW57824.1|  356|Caenorhabditis elegans Serpentine r...    27   1.8  
AC024831-6|AAY86308.1|  351|Caenorhabditis elegans Hypothetical ...    27   1.8  
U42839-7|AAC69012.1| 1722|Caenorhabditis elegans Drosophila crum...    25   5.4  
U41107-2|AAK73880.1|  111|Caenorhabditis elegans Temporarily ass...    25   7.1  
U21323-7|AAA62551.1|  465|Caenorhabditis elegans Hypothetical pr...    25   7.1  
Z49067-3|CAA88852.3|  591|Caenorhabditis elegans Hypothetical pr...    25   9.4  
Z34799-8|CAA84319.3|  591|Caenorhabditis elegans Hypothetical pr...    25   9.4  

>AF045642-10|AAC02587.1|  459|Caenorhabditis elegans Hypothetical
           protein C17H12.9 protein.
          Length = 459

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 16/42 (38%), Positives = 20/42 (47%)
 Frame = -3

Query: 134 VSTDRNVRSKCRCSNVSCSSHYDAQLTAFFIDPRAK*STVPS 9
           V T+RN+  K R SN +    YD   T   + P    STV S
Sbjct: 61  VQTERNLSKKGRTSNRNARQGYDNYATLTNLQPLPPISTVTS 102


>AC024831-12|AAW57824.1|  356|Caenorhabditis elegans Serpentine
           receptor, class t protein23 protein.
          Length = 356

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
 Frame = -2

Query: 180 FFFLQPA--LRQEWSWMCLHGPQCAFEMSMFKCV 85
           FF+  PA  L  + +W C HG  C   ++M K V
Sbjct: 272 FFYSPPAVVLVGQLAWQCAHGSVCIVYITMNKTV 305


>AC024831-6|AAY86308.1|  351|Caenorhabditis elegans Hypothetical
           protein Y55F3C.10 protein.
          Length = 351

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
 Frame = -2

Query: 180 FFFLQPA--LRQEWSWMCLHGPQCAFEMSMFKCV 85
           FF+  PA  L  + +W C HG  C   ++M K V
Sbjct: 268 FFYSPPAVVLIGQLAWQCAHGSVCIVYITMNKTV 301


>U42839-7|AAC69012.1| 1722|Caenorhabditis elegans Drosophila crumbs
           homolog protein 1 protein.
          Length = 1722

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 13/30 (43%), Positives = 15/30 (50%), Gaps = 5/30 (16%)
 Frame = -3

Query: 149 SGPGCVSTDRNVRSKC-----RCSNVSCSS 75
           SGP C+  D     KC     +CS VSC S
Sbjct: 486 SGPVCICDDGYFGQKCDQKHDKCSKVSCPS 515


>U41107-2|AAK73880.1|  111|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 234 protein.
          Length = 111

 Score = 25.0 bits (52), Expect = 7.1
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = -3

Query: 149 SGPGCVSTDRNVRSKCRCSNVSCSSHYDAQLT 54
           S  GC ST++N    C C+   C+S +D   T
Sbjct: 72  SSSGC-STNKNGYGTCCCTRDLCNSGFDFSKT 102


>U21323-7|AAA62551.1|  465|Caenorhabditis elegans Hypothetical
           protein C45G9.8 protein.
          Length = 465

 Score = 25.0 bits (52), Expect = 7.1
 Identities = 14/29 (48%), Positives = 17/29 (58%), Gaps = 2/29 (6%)
 Frame = -3

Query: 182 FFFFYSRPSDRSGPGCVSTD--RNVRSKC 102
           F +F+SR   RS    VST+   N RSKC
Sbjct: 12  FTYFFSRKGTRSYFRWVSTETSNNTRSKC 40


>Z49067-3|CAA88852.3|  591|Caenorhabditis elegans Hypothetical
           protein C44F1.1 protein.
          Length = 591

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +2

Query: 47  RTQLTARHSVNCRTHLNID 103
           R QL  R+++    HLNID
Sbjct: 116 RRQLATRYAIQLEVHLNID 134


>Z34799-8|CAA84319.3|  591|Caenorhabditis elegans Hypothetical
           protein C44F1.1 protein.
          Length = 591

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +2

Query: 47  RTQLTARHSVNCRTHLNID 103
           R QL  R+++    HLNID
Sbjct: 116 RRQLATRYAIQLEVHLNID 134


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,876,711
Number of Sequences: 27780
Number of extensions: 81205
Number of successful extensions: 170
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 165
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 170
length of database: 12,740,198
effective HSP length: 42
effective length of database: 11,573,438
effective search space used: 219895322
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)