Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0024_K04
         (169 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC18E5.11c |edc3|SPBC23G7.01c|enhancer of mRNA decapping Edc3 ...    27   0.25 
SPAC2G11.14 |taf111|taf1, taf1, taf130|transcription factor TFII...    25   1.0  
SPAC12G12.09 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    23   7.1  
SPBC32H8.07 |git5|gpb1|heterotrimeric G protein beta subunit Git...    23   7.1  
SPBC16H5.02 |pfk1||6-phosphofructokinase |Schizosaccharomyces po...    22   9.4  
SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyce...    22   9.4  
SPCC126.09 |||vacuolar membrane zinc transporter |Schizosaccharo...    22   9.4  
SPAC959.04c |||mannosyltransferase |Schizosaccharomyces pombe|ch...    22   9.4  

>SPBC18E5.11c |edc3|SPBC23G7.01c|enhancer of mRNA decapping Edc3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 454

 Score = 27.5 bits (58), Expect = 0.25
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = +3

Query: 36  DRKPSQVLRHLQSLAGPSVPDDFV 107
           ++ P++   H Q++ GPSV D+FV
Sbjct: 133 NKSPNRNYHHKQNVLGPSVKDEFV 156


>SPAC2G11.14 |taf111|taf1, taf1, taf130|transcription factor TFIID
           complex subunit Taf111|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 979

 Score = 25.4 bits (53), Expect = 1.0
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = -2

Query: 105 RSHLVHWDQQGSASVVKPETVC 40
           +S+ V  D+ G+ S+V PETVC
Sbjct: 658 KSNEVVPDEAGTRSMVSPETVC 679


>SPAC12G12.09 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 977

 Score = 22.6 bits (46), Expect = 7.1
 Identities = 14/46 (30%), Positives = 22/46 (47%)
 Frame = +3

Query: 6   QDFGTREDIGDRKPSQVLRHLQSLAGPSVPDDFVRSLWSSRLPTHI 143
           Q+F T  D  +  P Q +  L+  +G  VP    +S  SS + T +
Sbjct: 153 QEFRTVADYREFSPGQSVNSLKPNSGDEVPS--TKSSTSSEMHTQL 196


>SPBC32H8.07 |git5|gpb1|heterotrimeric G protein beta subunit
           Git5|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 305

 Score = 22.6 bits (46), Expect = 7.1
 Identities = 10/27 (37%), Positives = 11/27 (40%)
 Frame = +2

Query: 17  HEGRYRRSQTVSGFTTLAEPCWSQCTR 97
           HE R       S  T LA   W +C R
Sbjct: 273 HENRISSLALTSDGTMLATGSWDECVR 299


>SPBC16H5.02 |pfk1||6-phosphofructokinase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 942

 Score = 22.2 bits (45), Expect = 9.4
 Identities = 9/20 (45%), Positives = 15/20 (75%), Gaps = 1/20 (5%)
 Frame = +1

Query: 19  RGKISAIANR-LRFYDTCRA 75
           R + + +A R +RF++TCRA
Sbjct: 861 RARAARLAMRAIRFFETCRA 880


>SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1610

 Score = 22.2 bits (45), Expect = 9.4
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = +1

Query: 19  RGKISAIANRLRFYDT 66
           RGKIS +   + +YDT
Sbjct: 646 RGKISLVKTLVEYYDT 661


>SPCC126.09 |||vacuolar membrane zinc transporter
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 418

 Score = 22.2 bits (45), Expect = 9.4
 Identities = 7/18 (38%), Positives = 11/18 (61%)
 Frame = +1

Query: 55  FYDTCRALLVPVYQMTSC 108
           FYD C   L+  + +T+C
Sbjct: 16  FYDCCGLFLLTFFLLTTC 33


>SPAC959.04c |||mannosyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 298

 Score = 22.2 bits (45), Expect = 9.4
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = -2

Query: 123 LTIMIARSHLVHWDQQGSASVVKPETVCDRRY 28
           L  ++  S+LVHWD     S VKP    +R Y
Sbjct: 72  LQFILTISYLVHWD----LSQVKPLVENNRLY 99


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 721,197
Number of Sequences: 5004
Number of extensions: 10307
Number of successful extensions: 38
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 38
length of database: 2,362,478
effective HSP length: 36
effective length of database: 2,182,334
effective search space used: 41464346
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)