Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0024_K04
         (169 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_01_0186 - 2077298-2078731                                           29   0.38 
07_01_0722 + 5522862-5523410                                           27   2.7  
11_01_0375 - 2855714-2855914,2856009-2856161,2856644-2856775,285...    26   3.6  
06_03_0287 - 19168685-19168735,19168847-19168884,19169517-191697...    26   4.7  
04_04_0385 - 24858580-24858721,24858772-24858850,24859155-248593...    26   4.7  
07_03_0382 + 17470508-17470807,17471449-17474517                       25   6.2  
08_01_0345 + 3055522-3055827,3055968-3056022,3056744-3056919,305...    25   8.2  
04_03_0491 - 16519274-16519552,16519945-16520195,16520317-165204...    25   8.2  

>10_01_0186 - 2077298-2078731
          Length = 477

 Score = 29.5 bits (63), Expect = 0.38
 Identities = 22/52 (42%), Positives = 31/52 (59%), Gaps = 6/52 (11%)
 Frame = +3

Query: 21  REDIGDRK-PSQVLRHLQSLAG-PSVPD-DFVRSLWSSRLPTH---IQVIVA 158
           R+D  +RK PS + R L  +AG  ++PD DF    W SR+P H   +Q +VA
Sbjct: 409 RDDSPNRKKPSLLFRDL--IAGCAAIPDGDFELVTWESRIPPHTMYVQSVVA 458


>07_01_0722 + 5522862-5523410
          Length = 182

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 11/33 (33%), Positives = 21/33 (63%)
 Frame = -1

Query: 103 KSSGTLGPARLCKCRKT*DGLRSPISSLVPKSC 5
           +S+  + P ++   +K  DGL +P +SLV ++C
Sbjct: 99  ESTADVPPEKVGLLKKAFDGLAAPFASLVAEAC 131


>11_01_0375 -
           2855714-2855914,2856009-2856161,2856644-2856775,
           2856875-2857071,2858506-2858590
          Length = 255

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 11/40 (27%), Positives = 22/40 (55%)
 Frame = +2

Query: 17  HEGRYRRSQTVSGFTTLAEPCWSQCTR*LRAIIMVKPITD 136
           H  + + + T+  F TL+   W+Q ++  R  ++ KP+ D
Sbjct: 151 HIRKLKITATLIKFMTLSYELWAQISQGYRQSVLTKPLCD 190


>06_03_0287 -
           19168685-19168735,19168847-19168884,19169517-19169727,
           19171461-19171643,19171879-19172028,19172161-19172256,
           19172378-19172464,19172535-19172741,19172823-19173047,
           19173150-19173261,19173397-19173453,19175522-19176882
          Length = 925

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -1

Query: 133 GNRLDHNDRTKSSGTLGPAR 74
           G R DH  R ++ G+LGP R
Sbjct: 337 GRRRDHGTRGRNVGSLGPQR 356


>04_04_0385 -
           24858580-24858721,24858772-24858850,24859155-24859302,
           24859939-24860239,24860327-24860407,24860727-24860875,
           24861073-24861215,24861404-24861556,24861664-24861742,
           24861851-24861916
          Length = 446

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = +3

Query: 105 VRSLWSSRLPTHIQVIVAS 161
           V +LW +R+PTHI  ++ S
Sbjct: 424 VEALWHTRMPTHIFGVILS 442


>07_03_0382 + 17470508-17470807,17471449-17474517
          Length = 1122

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
 Frame = +3

Query: 9    DFGTREDIGD-RKPSQVLRHLQSLAGPSVPDDFV 107
            DF   + IG+  KP  VL H  ++ G S+PD  V
Sbjct: 1014 DFHVDQRIGEINKPPVVLGHGTAVGGLSIPDHSV 1047


>08_01_0345 + 3055522-3055827,3055968-3056022,3056744-3056919,
            3057104-3057232,3057313-3057572,3057688-3058001,
            3058268-3058491,3058862-3059214,3059489-3059916,
            3060031-3061514
          Length = 1242

 Score = 25.0 bits (52), Expect = 8.2
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +1

Query: 13   SARGKISAIANRLRFYDTCR 72
            S  GK + ++  LRFYD CR
Sbjct: 1026 SGAGKSTIVSLLLRFYDPCR 1045


>04_03_0491 -
           16519274-16519552,16519945-16520195,16520317-16520408,
           16520409-16520605,16521462-16521501,16522915-16522994
          Length = 312

 Score = 25.0 bits (52), Expect = 8.2
 Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 5/55 (9%)
 Frame = -2

Query: 165 VATLQLPVCESV-----IGLTIMIARSHLVHWDQQGSASVVKPETVCDRRYLPSC 16
           + +L    CES+       +T+M+  +     DQ GS+S  +   V  RRY  +C
Sbjct: 219 ILSLARTFCESIGLVEESSITLMMIDTTSTQGDQGGSSSSSRSWEVTGRRYKDAC 273


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,911,579
Number of Sequences: 37544
Number of extensions: 74868
Number of successful extensions: 227
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 225
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 227
length of database: 14,793,348
effective HSP length: 36
effective length of database: 13,441,764
effective search space used: 255393516
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)