Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0024_K04
         (169 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF258558-1|AAG23761.1|  484|Homo sapiens PP3476 protein.               29   2.7  
BC014904-1|AAH14904.1|  893|Homo sapiens leucine-rich repeats an...    28   6.3  
AL833849-1|CAD38708.1|  633|Homo sapiens hypothetical protein pr...    28   6.3  
AK074893-1|BAC11272.1|  308|Homo sapiens protein ( Homo sapiens ...    28   6.3  
AF274972-1|AAG13461.1|  910|Homo sapiens PIDD protein.                 28   6.3  
AF229178-1|AAF69491.1|  753|Homo sapiens leucine rich repeat and...    28   6.3  
AB209529-1|BAD92766.1|  751|Homo sapiens leucine rich repeat and...    28   6.3  
AB208949-1|BAD92186.1|  485|Homo sapiens Hypothetical protein DK...    28   6.3  
AB208832-1|BAD92069.1|  680|Homo sapiens Hypothetical protein DK...    28   6.3  

>AF258558-1|AAG23761.1|  484|Homo sapiens PP3476 protein.
          Length = 484

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 21/56 (37%), Positives = 28/56 (50%), Gaps = 6/56 (10%)
 Frame = -1

Query: 166 GCDATITCM*------VGNRLDHNDRTKSSGTLGPARLCKCRKT*DGLRSPISSLV 17
           GC+AT +C         G R     RTK + T+GP R    R+  D  R+P+SS V
Sbjct: 384 GCNATYSCTPGGALKQPGGRCGQQWRTKRTDTMGPGRALH-RRLADMPRAPLSSNV 438


>BC014904-1|AAH14904.1|  893|Homo sapiens leucine-rich repeats and
           death domain containing protein.
          Length = 893

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 10/25 (40%), Positives = 18/25 (72%)
 Frame = -2

Query: 159 TLQLPVCESVIGLTIMIARSHLVHW 85
           T+QLP+   + GL++  +R HL++W
Sbjct: 533 TVQLPLPSGITGLSLDRSRLHLLYW 557


>AL833849-1|CAD38708.1|  633|Homo sapiens hypothetical protein
           protein.
          Length = 633

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 10/25 (40%), Positives = 18/25 (72%)
 Frame = -2

Query: 159 TLQLPVCESVIGLTIMIARSHLVHW 85
           T+QLP+   + GL++  +R HL++W
Sbjct: 327 TVQLPLPSGITGLSLDRSRLHLLYW 351


>AK074893-1|BAC11272.1|  308|Homo sapiens protein ( Homo sapiens
           cDNA FLJ90412 fis, clone NT2RP3000059, weakly similar to
           ANKYRIN, BRAIN VARIANT 2. ).
          Length = 308

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 10/25 (40%), Positives = 18/25 (72%)
 Frame = -2

Query: 159 TLQLPVCESVIGLTIMIARSHLVHW 85
           T+QLP+   + GL++  +R HL++W
Sbjct: 220 TVQLPLPSGITGLSLDRSRLHLLYW 244


>AF274972-1|AAG13461.1|  910|Homo sapiens PIDD protein.
          Length = 910

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 10/25 (40%), Positives = 18/25 (72%)
 Frame = -2

Query: 159 TLQLPVCESVIGLTIMIARSHLVHW 85
           T+QLP+   + GL++  +R HL++W
Sbjct: 533 TVQLPLPSGITGLSLDRSRLHLLYW 557


>AF229178-1|AAF69491.1|  753|Homo sapiens leucine rich repeat and
           death domain containing protein protein.
          Length = 753

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 10/25 (40%), Positives = 18/25 (72%)
 Frame = -2

Query: 159 TLQLPVCESVIGLTIMIARSHLVHW 85
           T+QLP+   + GL++  +R HL++W
Sbjct: 387 TVQLPLPSGITGLSLDRSRLHLLYW 411


>AB209529-1|BAD92766.1|  751|Homo sapiens leucine rich repeat and
           death domain containing protein isoform 1 variant
           protein.
          Length = 751

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 10/25 (40%), Positives = 18/25 (72%)
 Frame = -2

Query: 159 TLQLPVCESVIGLTIMIARSHLVHW 85
           T+QLP+   + GL++  +R HL++W
Sbjct: 374 TVQLPLPSGITGLSLDRSRLHLLYW 398


>AB208949-1|BAD92186.1|  485|Homo sapiens Hypothetical protein
           DKFZp434D229 variant protein.
          Length = 485

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 10/25 (40%), Positives = 18/25 (72%)
 Frame = -2

Query: 159 TLQLPVCESVIGLTIMIARSHLVHW 85
           T+QLP+   + GL++  +R HL++W
Sbjct: 196 TVQLPLPSGITGLSLDRSRLHLLYW 220


>AB208832-1|BAD92069.1|  680|Homo sapiens Hypothetical protein
           DKFZp434D229 variant protein.
          Length = 680

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 10/25 (40%), Positives = 18/25 (72%)
 Frame = -2

Query: 159 TLQLPVCESVIGLTIMIARSHLVHW 85
           T+QLP+   + GL++  +R HL++W
Sbjct: 374 TVQLPLPSGITGLSLDRSRLHLLYW 398


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,085,207
Number of Sequences: 237096
Number of extensions: 381422
Number of successful extensions: 4631
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 4622
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4631
length of database: 76,859,062
effective HSP length: 35
effective length of database: 68,560,702
effective search space used: 1371214040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)