Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0024_K04
         (169 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68753-6|CAD45610.1|  597|Caenorhabditis elegans Hypothetical pr...    29   0.44 
Z68753-5|CAB54512.2|  613|Caenorhabditis elegans Hypothetical pr...    29   0.44 
Z68753-4|CAB54511.2|  606|Caenorhabditis elegans Hypothetical pr...    29   0.44 
AY043268-1|AAK85706.1|  606|Caenorhabditis elegans CCR4 protein.       29   0.44 
Z70211-1|CAA94157.2|  299|Caenorhabditis elegans Hypothetical pr...    27   1.3  
Z36753-7|CAA85339.1|  339|Caenorhabditis elegans Hypothetical pr...    25   7.2  
U41030-6|AAA82365.1|  375|Caenorhabditis elegans Hypothetical pr...    25   9.5  

>Z68753-6|CAD45610.1|  597|Caenorhabditis elegans Hypothetical
           protein ZC518.3c protein.
          Length = 597

 Score = 29.1 bits (62), Expect = 0.44
 Identities = 9/27 (33%), Positives = 21/27 (77%)
 Frame = -2

Query: 156 LQLPVCESVIGLTIMIARSHLVHWDQQ 76
           +Q+P+ ++V+G  +++A +H +HWD +
Sbjct: 369 MQIPMNDNVVGNPLVVATAH-IHWDPE 394


>Z68753-5|CAB54512.2|  613|Caenorhabditis elegans Hypothetical
           protein ZC518.3b protein.
          Length = 613

 Score = 29.1 bits (62), Expect = 0.44
 Identities = 9/27 (33%), Positives = 21/27 (77%)
 Frame = -2

Query: 156 LQLPVCESVIGLTIMIARSHLVHWDQQ 76
           +Q+P+ ++V+G  +++A +H +HWD +
Sbjct: 385 MQIPMNDNVVGNPLVVATAH-IHWDPE 410


>Z68753-4|CAB54511.2|  606|Caenorhabditis elegans Hypothetical
           protein ZC518.3a protein.
          Length = 606

 Score = 29.1 bits (62), Expect = 0.44
 Identities = 9/27 (33%), Positives = 21/27 (77%)
 Frame = -2

Query: 156 LQLPVCESVIGLTIMIARSHLVHWDQQ 76
           +Q+P+ ++V+G  +++A +H +HWD +
Sbjct: 378 MQIPMNDNVVGNPLVVATAH-IHWDPE 403


>AY043268-1|AAK85706.1|  606|Caenorhabditis elegans CCR4 protein.
          Length = 606

 Score = 29.1 bits (62), Expect = 0.44
 Identities = 9/27 (33%), Positives = 21/27 (77%)
 Frame = -2

Query: 156 LQLPVCESVIGLTIMIARSHLVHWDQQ 76
           +Q+P+ ++V+G  +++A +H +HWD +
Sbjct: 378 MQIPMNDNVVGNPLVVATAH-IHWDPE 403


>Z70211-1|CAA94157.2|  299|Caenorhabditis elegans Hypothetical
           protein K11E4.1 protein.
          Length = 299

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = +1

Query: 1   CCRISARGKISAIANRLRFYDTCRALLVPVYQMTSCDHY 117
           CC        S++A  L  Y+TC + + PV   T+ DHY
Sbjct: 241 CCTTIHYTSWSSVA--LNTYNTCASNMCPVTTPTASDHY 277


>Z36753-7|CAA85339.1|  339|Caenorhabditis elegans Hypothetical
           protein T09A5.8 protein.
          Length = 339

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 13/37 (35%), Positives = 17/37 (45%)
 Frame = -1

Query: 121 DHNDRTKSSGTLGPARLCKCRKT*DGLRSPISSLVPK 11
           DH     S G+ G  +  K  K      +P+SS VPK
Sbjct: 109 DHESNHDSDGSYGTPKTSKKSKKSAKNETPVSSKVPK 145


>U41030-6|AAA82365.1|  375|Caenorhabditis elegans Hypothetical
           protein C44C1.5a protein.
          Length = 375

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +1

Query: 43  NRLRFYDTCRALLVPVYQMTSCDHY 117
           N +R +D  R+ ++P+Y   SCD Y
Sbjct: 268 NTVRGFD--RSFVIPMYGFKSCDDY 290


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,124,533
Number of Sequences: 27780
Number of extensions: 63552
Number of successful extensions: 148
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 147
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 148
length of database: 12,740,198
effective HSP length: 36
effective length of database: 11,740,118
effective search space used: 223062242
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)