Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0024_K03
         (290 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    21   3.1  
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    21   4.1  
AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase p...    20   5.4  
AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase p...    20   5.4  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              20   7.1  
EF032397-1|ABM97933.1|  200|Apis mellifera arginine kinase protein.    19   9.4  
AF023619-1|AAC39040.1|  355|Apis mellifera arginine kinase protein.    19   9.4  

>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 21.0 bits (42), Expect = 3.1
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = -3

Query: 204 SPGHPQPHIDGIVDEPLQRCE 142
           +PG+P  H D    E  ++CE
Sbjct: 184 NPGNPLAHYDQTAIEIWKQCE 204


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 20.6 bits (41), Expect = 4.1
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = +1

Query: 196 PRAPPPTMPESMRKR 240
           PR  PP+  ES R+R
Sbjct: 396 PRQTPPSRKESGRRR 410


>AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 20.2 bits (40), Expect = 5.4
 Identities = 11/41 (26%), Positives = 17/41 (41%)
 Frame = +1

Query: 88  GWAGVWKGLGPMIVMIGTLTALQWFIYDAVNVWLRMPRAPP 210
           G  G+++G G  +  I    A  +  YD     L  P+  P
Sbjct: 171 GITGLYRGFGVSVQGIIIYRAAYFGFYDTARGMLPDPKKTP 211


>AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 20.2 bits (40), Expect = 5.4
 Identities = 11/41 (26%), Positives = 17/41 (41%)
 Frame = +1

Query: 88  GWAGVWKGLGPMIVMIGTLTALQWFIYDAVNVWLRMPRAPP 210
           G  G+++G G  +  I    A  +  YD     L  P+  P
Sbjct: 171 GITGLYRGFGVSVQGIIIYRAAYFGFYDTARGMLPDPKKTP 211


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 19.8 bits (39), Expect = 7.1
 Identities = 8/15 (53%), Positives = 9/15 (60%)
 Frame = +3

Query: 186  AEDAPGSAPDYARVD 230
            AE+AP   P   RVD
Sbjct: 972  AEEAPSGPPTSIRVD 986


>EF032397-1|ABM97933.1|  200|Apis mellifera arginine kinase protein.
          Length = 200

 Score = 19.4 bits (38), Expect = 9.4
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = +3

Query: 60  DRWVYNWQARLGRSLEG 110
           + ++ + + R GRSLEG
Sbjct: 100 NEFIVSTRVRCGRSLEG 116


>AF023619-1|AAC39040.1|  355|Apis mellifera arginine kinase protein.
          Length = 355

 Score = 19.4 bits (38), Expect = 9.4
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = +3

Query: 60  DRWVYNWQARLGRSLEG 110
           + ++ + + R GRSLEG
Sbjct: 116 NEFIVSTRVRCGRSLEG 132


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 92,256
Number of Sequences: 438
Number of extensions: 2093
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 49
effective length of database: 124,881
effective search space used:  5869407
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)