Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0024_J24
(328 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U95299-1|AAC32288.1| 2003|Homo sapiens Notch4 protein. 33 0.27
U89335-1|AAC63097.1| 1999|Homo sapiens notch4 protein. 33 0.27
D63395-1|BAA09708.1| 1095|Homo sapiens notch related protein pro... 33 0.27
BX284927-1|CAM25850.1| 2003|Homo sapiens Notch homolog 4 (Drosop... 33 0.27
BX284686-1|CAM26209.1| 2003|Homo sapiens Notch homolog 4 (Drosop... 33 0.27
AL845509-1|CAI18564.1| 2003|Homo sapiens Notch homolog 4 (Drosop... 33 0.27
AL845464-12|CAI41803.1| 2003|Homo sapiens Notch homolog 4 (Droso... 33 0.27
AL662884-27|CAI18362.1| 2003|Homo sapiens Notch homolog 4 (Droso... 33 0.27
AL662830-9|CAI17543.1| 2005|Homo sapiens Notch homolog 4 (Drosop... 33 0.27
Z97652-2|CAM26431.1| 1269|Homo sapiens Crm, cramped-like (Drosop... 32 0.47
AL031708-1|CAM26357.1| 1269|Homo sapiens Crm, cramped-like (Dros... 32 0.47
AL031009-1|CAM26477.1| 1269|Homo sapiens Crm, cramped-like (Dros... 32 0.47
AF031166-1|AAK54351.1| 272|Homo sapiens SRp46 splicing factor p... 31 0.63
AF031165-1|AAK54350.1| 282|Homo sapiens SRp46 splicing factor p... 31 0.63
AF037066-1|AAC04789.1| 253|Homo sapiens ORCTL2S hypothetical pr... 31 0.83
AF035407-1|AAC17497.1| 253|Homo sapiens p27-BWR1B protein. 31 0.83
AJ238850-1|CAB52754.1| 1203|Homo sapiens hyperpolarization-activ... 30 1.9
AJ132429-1|CAB42604.1| 1203|Homo sapiens hyperpolarization-activ... 30 1.9
X59372-1|CAA42016.1| 342|Homo sapiens homeobox protein protein. 29 4.4
BC065483-1|AAH65483.1| 206|Homo sapiens LOC284804 protein protein. 29 4.4
BC023657-1|AAH23657.1| 206|Homo sapiens LOC284804 protein protein. 29 4.4
AL031687-1|CAB51587.2| 828|Homo sapiens cadherin-like 22 protein. 28 5.8
AF035300-1|AAB88183.1| 380|Homo sapiens protein ( Homo sapiens ... 28 5.8
AB209063-1|BAD92300.1| 1099|Homo sapiens Polyhomeotic-like prote... 28 5.8
>U95299-1|AAC32288.1| 2003|Homo sapiens Notch4 protein.
Length = 2003
Score = 32.7 bits (71), Expect = 0.27
Identities = 16/33 (48%), Positives = 20/33 (60%)
Frame = +3
Query: 66 RQRSVRATVPAYGNAGGGAPRGRELAGGMGPAG 164
R R+V +VP +G GG PR R L+ G GP G
Sbjct: 1842 RARTVSVSVPPHG--GGALPRCRTLSAGAGPRG 1872
>U89335-1|AAC63097.1| 1999|Homo sapiens notch4 protein.
Length = 1999
Score = 32.7 bits (71), Expect = 0.27
Identities = 16/33 (48%), Positives = 20/33 (60%)
Frame = +3
Query: 66 RQRSVRATVPAYGNAGGGAPRGRELAGGMGPAG 164
R R+V +VP +G GG PR R L+ G GP G
Sbjct: 1838 RARTVSVSVPPHG--GGALPRCRTLSAGAGPRG 1868
>D63395-1|BAA09708.1| 1095|Homo sapiens notch related protein protein.
Length = 1095
Score = 32.7 bits (71), Expect = 0.27
Identities = 16/33 (48%), Positives = 20/33 (60%)
Frame = +3
Query: 66 RQRSVRATVPAYGNAGGGAPRGRELAGGMGPAG 164
R R+V +VP +G GG PR R L+ G GP G
Sbjct: 934 RARTVSVSVPPHG--GGALPRCRTLSAGAGPRG 964
>BX284927-1|CAM25850.1| 2003|Homo sapiens Notch homolog 4 (Drosophila)
protein.
Length = 2003
Score = 32.7 bits (71), Expect = 0.27
Identities = 16/33 (48%), Positives = 20/33 (60%)
Frame = +3
Query: 66 RQRSVRATVPAYGNAGGGAPRGRELAGGMGPAG 164
R R+V +VP +G GG PR R L+ G GP G
Sbjct: 1842 RARTVSVSVPPHG--GGALPRCRTLSAGAGPRG 1872
>BX284686-1|CAM26209.1| 2003|Homo sapiens Notch homolog 4 (Drosophila)
protein.
Length = 2003
Score = 32.7 bits (71), Expect = 0.27
Identities = 16/33 (48%), Positives = 20/33 (60%)
Frame = +3
Query: 66 RQRSVRATVPAYGNAGGGAPRGRELAGGMGPAG 164
R R+V +VP +G GG PR R L+ G GP G
Sbjct: 1842 RARTVSVSVPPHG--GGALPRCRTLSAGAGPRG 1872
>AL845509-1|CAI18564.1| 2003|Homo sapiens Notch homolog 4 (Drosophila)
protein.
Length = 2003
Score = 32.7 bits (71), Expect = 0.27
Identities = 16/33 (48%), Positives = 20/33 (60%)
Frame = +3
Query: 66 RQRSVRATVPAYGNAGGGAPRGRELAGGMGPAG 164
R R+V +VP +G GG PR R L+ G GP G
Sbjct: 1842 RARTVSVSVPPHG--GGALPRCRTLSAGAGPRG 1872
>AL845464-12|CAI41803.1| 2003|Homo sapiens Notch homolog 4
(Drosophila) protein.
Length = 2003
Score = 32.7 bits (71), Expect = 0.27
Identities = 16/33 (48%), Positives = 20/33 (60%)
Frame = +3
Query: 66 RQRSVRATVPAYGNAGGGAPRGRELAGGMGPAG 164
R R+V +VP +G GG PR R L+ G GP G
Sbjct: 1842 RARTVSVSVPPHG--GGALPRCRTLSAGAGPRG 1872
>AL662884-27|CAI18362.1| 2003|Homo sapiens Notch homolog 4
(Drosophila) protein.
Length = 2003
Score = 32.7 bits (71), Expect = 0.27
Identities = 16/33 (48%), Positives = 20/33 (60%)
Frame = +3
Query: 66 RQRSVRATVPAYGNAGGGAPRGRELAGGMGPAG 164
R R+V +VP +G GG PR R L+ G GP G
Sbjct: 1842 RARTVSVSVPPHG--GGALPRCRTLSAGAGPRG 1872
>AL662830-9|CAI17543.1| 2005|Homo sapiens Notch homolog 4 (Drosophila)
protein.
Length = 2005
Score = 32.7 bits (71), Expect = 0.27
Identities = 16/33 (48%), Positives = 20/33 (60%)
Frame = +3
Query: 66 RQRSVRATVPAYGNAGGGAPRGRELAGGMGPAG 164
R R+V +VP +G GG PR R L+ G GP G
Sbjct: 1844 RARTVSVSVPPHG--GGALPRCRTLSAGAGPRG 1874
>Z97652-2|CAM26431.1| 1269|Homo sapiens Crm, cramped-like
(Drosophila) protein.
Length = 1269
Score = 31.9 bits (69), Expect = 0.47
Identities = 19/51 (37%), Positives = 22/51 (43%)
Frame = +3
Query: 60 SLRQRSVRATVPAYGNAGGGAPRGRELAGGMGPAGRVY*RNYGLPXGRRRS 212
S R R + GNAGG PRG+ GG +G V P G RS
Sbjct: 91 SKRPRKDPPSAVGSGNAGGSGPRGKGAEGGGSSSGNVSGVAPAAPAGGSRS 141
>AL031708-1|CAM26357.1| 1269|Homo sapiens Crm, cramped-like
(Drosophila) protein.
Length = 1269
Score = 31.9 bits (69), Expect = 0.47
Identities = 19/51 (37%), Positives = 22/51 (43%)
Frame = +3
Query: 60 SLRQRSVRATVPAYGNAGGGAPRGRELAGGMGPAGRVY*RNYGLPXGRRRS 212
S R R + GNAGG PRG+ GG +G V P G RS
Sbjct: 91 SKRPRKDPPSAVGSGNAGGSGPRGKGAEGGGSSSGNVSGVAPAAPAGGSRS 141
>AL031009-1|CAM26477.1| 1269|Homo sapiens Crm, cramped-like
(Drosophila) protein.
Length = 1269
Score = 31.9 bits (69), Expect = 0.47
Identities = 19/51 (37%), Positives = 22/51 (43%)
Frame = +3
Query: 60 SLRQRSVRATVPAYGNAGGGAPRGRELAGGMGPAGRVY*RNYGLPXGRRRS 212
S R R + GNAGG PRG+ GG +G V P G RS
Sbjct: 91 SKRPRKDPPSAVGSGNAGGSGPRGKGAEGGGSSSGNVSGVAPAAPAGGSRS 141
>AF031166-1|AAK54351.1| 272|Homo sapiens SRp46 splicing factor
protein.
Length = 272
Score = 31.5 bits (68), Expect = 0.63
Identities = 24/68 (35%), Positives = 26/68 (38%), Gaps = 5/68 (7%)
Frame = +3
Query: 24 DAHPCAAEHLYGSLRQRSVRATVPAYGN-----AGGGAPRGRELAGGMGPAGRVY*RNYG 188
DA A L R +R V YG + G PRGR GG G R Y R
Sbjct: 57 DAQDAEAAMDGAELDGRELRVQVARYGRRDLPRSRQGEPRGRSRGGGYGRRSRSYGRRSR 116
Query: 189 LPXGRRRS 212
P R RS
Sbjct: 117 SPRRRHRS 124
>AF031165-1|AAK54350.1| 282|Homo sapiens SRp46 splicing factor
protein.
Length = 282
Score = 31.5 bits (68), Expect = 0.63
Identities = 24/68 (35%), Positives = 26/68 (38%), Gaps = 5/68 (7%)
Frame = +3
Query: 24 DAHPCAAEHLYGSLRQRSVRATVPAYGN-----AGGGAPRGRELAGGMGPAGRVY*RNYG 188
DA A L R +R V YG + G PRGR GG G R Y R
Sbjct: 67 DAQDAEAAMDGAELDGRELRVQVARYGRRDLPRSRQGEPRGRSRGGGYGRRSRSYGRRSR 126
Query: 189 LPXGRRRS 212
P R RS
Sbjct: 127 SPRRRHRS 134
>AF037066-1|AAC04789.1| 253|Homo sapiens ORCTL2S hypothetical
protein protein.
Length = 253
Score = 31.1 bits (67), Expect = 0.83
Identities = 19/58 (32%), Positives = 26/58 (44%), Gaps = 1/58 (1%)
Frame = +1
Query: 100 MGTLGAERRAVENSPEGWVPREGC-TSATTDFRLEEGEVYLFLKHNVTPNKTHQ*RYR 270
MG L EN P GWV ++ T A DF L+ ++L+ V P R+R
Sbjct: 1 MGELPGSEGMWENCPLGWVKKKASGTLAPLDFLLQRKRLWLWASEPVRPQPQGIHRFR 58
>AF035407-1|AAC17497.1| 253|Homo sapiens p27-BWR1B protein.
Length = 253
Score = 31.1 bits (67), Expect = 0.83
Identities = 19/58 (32%), Positives = 26/58 (44%), Gaps = 1/58 (1%)
Frame = +1
Query: 100 MGTLGAERRAVENSPEGWVPREGC-TSATTDFRLEEGEVYLFLKHNVTPNKTHQ*RYR 270
MG L EN P GWV ++ T A DF L+ ++L+ V P R+R
Sbjct: 1 MGELPGSEGMWENCPLGWVKKKASGTLAPLDFLLQRKRLWLWASEPVRPQPQGIHRFR 58
>AJ238850-1|CAB52754.1| 1203|Homo sapiens hyperpolarization-activated
channel type 4 protein.
Length = 1203
Score = 29.9 bits (64), Expect = 1.9
Identities = 14/30 (46%), Positives = 18/30 (60%)
Frame = +3
Query: 84 ATVPAYGNAGGGAPRGRELAGGMGPAGRVY 173
A P + AGGG+ G +GG+GP GR Y
Sbjct: 1114 AAFPLFPRAGGGSG-GSGSSGGLGPPGRPY 1142
>AJ132429-1|CAB42604.1| 1203|Homo sapiens hyperpolarization-activated
cyclic nucleotide gated cation channel hHCN4 protein.
Length = 1203
Score = 29.9 bits (64), Expect = 1.9
Identities = 14/30 (46%), Positives = 18/30 (60%)
Frame = +3
Query: 84 ATVPAYGNAGGGAPRGRELAGGMGPAGRVY 173
A P + AGGG+ G +GG+GP GR Y
Sbjct: 1114 AAFPLFPRAGGGSG-GSGSSGGLGPPGRPY 1142
>X59372-1|CAA42016.1| 342|Homo sapiens homeobox protein protein.
Length = 342
Score = 28.7 bits (61), Expect = 4.4
Identities = 17/63 (26%), Positives = 25/63 (39%), Gaps = 1/63 (1%)
Frame = +3
Query: 102 GNAGGGAPRGRELAGGMGPAGRVY*RNYGL-PXGRRRSLPIFKTQRDTEQNTSIALPDNQ 278
G GGG G GP+G R+YG+ P R P + +TS++ +
Sbjct: 121 GGGGGGGGGGPGRGPSPGPSGPANGRHYGIKPETRAAPAPATAASTTSSSSTSLSSSSKR 180
Query: 279 IFC 287
C
Sbjct: 181 TEC 183
>BC065483-1|AAH65483.1| 206|Homo sapiens LOC284804 protein protein.
Length = 206
Score = 28.7 bits (61), Expect = 4.4
Identities = 17/42 (40%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Frame = +3
Query: 48 HLYGSLRQRSVRA-TVPAYGNAGGGAPRGRELAGGMGPAGRV 170
H G R R V A + PA + G G P GR G G GR+
Sbjct: 21 HTAGQTRPRRVPARSSPAQPSPGTGRPGGRPAPEGAGRGGRM 62
>BC023657-1|AAH23657.1| 206|Homo sapiens LOC284804 protein protein.
Length = 206
Score = 28.7 bits (61), Expect = 4.4
Identities = 17/42 (40%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Frame = +3
Query: 48 HLYGSLRQRSVRA-TVPAYGNAGGGAPRGRELAGGMGPAGRV 170
H G R R V A + PA + G G P GR G G GR+
Sbjct: 21 HTAGQTRPRRVPARSSPAQPSPGTGRPGGRPAPEGAGRGGRM 62
>AL031687-1|CAB51587.2| 828|Homo sapiens cadherin-like 22 protein.
Length = 828
Score = 28.3 bits (60), Expect = 5.8
Identities = 19/60 (31%), Positives = 25/60 (41%)
Frame = +3
Query: 102 GNAGGGAPRGRELAGGMGPAGRVY*RNYGLPXGRRRSLPIFKTQRDTEQNTSIALPDNQI 281
G+AGGGA G G P + + LP G P F RD + +AL D +
Sbjct: 704 GSAGGGAGGGSGGGAGSPPQAHLPSERHSLPQGPPSPEPDFSVFRDF-ISRKVALADGDL 762
>AF035300-1|AAB88183.1| 380|Homo sapiens protein ( Homo sapiens
clone 23663 mRNA, partial cds. ).
Length = 380
Score = 28.3 bits (60), Expect = 5.8
Identities = 19/60 (31%), Positives = 25/60 (41%)
Frame = +3
Query: 102 GNAGGGAPRGRELAGGMGPAGRVY*RNYGLPXGRRRSLPIFKTQRDTEQNTSIALPDNQI 281
G+AGGGA G G P + + LP G P F RD + +AL D +
Sbjct: 256 GSAGGGAGGGSGGGAGSPPQAHLPSERHSLPQGPPSPEPDFSVFRDF-ISRKVALADGDL 314
>AB209063-1|BAD92300.1| 1099|Homo sapiens Polyhomeotic-like protein
1 variant protein.
Length = 1099
Score = 28.3 bits (60), Expect = 5.8
Identities = 22/66 (33%), Positives = 29/66 (43%)
Frame = +3
Query: 84 ATVPAYGNAGGGAPRGRELAGGMGPAGRVY*RNYGLPXGRRRSLPIFKTQRDTEQNTSIA 263
A PA G AGG RGR AG + P R R GRRR P + +R +
Sbjct: 2 AAGPAPGAAGGAGSRGR--AGRLPPRPR---RPRPSRKGRRRGEPAAEAERAPSPAWRLG 56
Query: 264 LPDNQI 281
P +++
Sbjct: 57 TPAHEV 62
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 49,726,772
Number of Sequences: 237096
Number of extensions: 1009288
Number of successful extensions: 3261
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 3011
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3246
length of database: 76,859,062
effective HSP length: 79
effective length of database: 58,128,478
effective search space used: 1685725862
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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