Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0024_J24
         (328 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL132860-21|CAB60518.2|  759|Caenorhabditis elegans Hypothetical...    29   0.79 
AF057032-1|AAC13567.1|  759|Caenorhabditis elegans DNA topoisome...    29   0.79 
Z46787-6|CAA86744.1|  392|Caenorhabditis elegans Hypothetical pr...    28   1.8  
Z77665-7|CAI46591.1|  360|Caenorhabditis elegans Hypothetical pr...    27   3.2  
Z36282-2|CAA85288.3|  240|Caenorhabditis elegans Hypothetical pr...    27   3.2  
Z35604-1|CAA84676.2|  744|Caenorhabditis elegans Hypothetical pr...    27   4.2  
AC024810-3|AAU20831.1|  660|Caenorhabditis elegans Vasa- and bel...    27   4.2  
AC024810-2|AAK68520.1|  644|Caenorhabditis elegans Vasa- and bel...    27   4.2  
AC024810-1|AAF60764.1|  641|Caenorhabditis elegans Vasa- and bel...    27   4.2  
Z93382-10|CAB07611.2| 1235|Caenorhabditis elegans Hypothetical p...    26   5.6  
Z92826-4|CAB07322.1|  309|Caenorhabditis elegans Hypothetical pr...    26   7.4  
Z82055-4|CAB04846.1|  330|Caenorhabditis elegans Hypothetical pr...    26   7.4  
Z68000-3|CAA91971.1| 1225|Caenorhabditis elegans Hypothetical pr...    26   7.4  
U50312-9|AAA92325.1|  294|Caenorhabditis elegans Collagen protei...    26   7.4  
U50312-7|AAA92323.2|  306|Caenorhabditis elegans Collagen protei...    26   7.4  
AF000264-9|AAC71124.2|  232|Caenorhabditis elegans Hypothetical ...    26   7.4  
Z93377-1|CAB07573.1|  340|Caenorhabditis elegans Hypothetical pr...    25   9.7  

>AL132860-21|CAB60518.2|  759|Caenorhabditis elegans Hypothetical
           protein Y56A3A.27 protein.
          Length = 759

 Score = 29.1 bits (62), Expect = 0.79
 Identities = 22/60 (36%), Positives = 27/60 (45%), Gaps = 4/60 (6%)
 Frame = +3

Query: 93  PAYGNAGGGAPRGRELAGGMGPAG-RVY*RNYGLPXGR--RRSL-PIFKTQRDTEQNTSI 260
           P     GGG PRG    GG GP G     +    P GR  R+S+ P  K   D  +N +I
Sbjct: 618 PGGPGGGGGPPRGPGGGGGGGPTGPPAPPKPPAKPRGRPPRKSISPAVKNGHDDPENDTI 677


>AF057032-1|AAC13567.1|  759|Caenorhabditis elegans DNA
           topoisomerase III protein.
          Length = 759

 Score = 29.1 bits (62), Expect = 0.79
 Identities = 22/60 (36%), Positives = 27/60 (45%), Gaps = 4/60 (6%)
 Frame = +3

Query: 93  PAYGNAGGGAPRGRELAGGMGPAG-RVY*RNYGLPXGR--RRSL-PIFKTQRDTEQNTSI 260
           P     GGG PRG    GG GP G     +    P GR  R+S+ P  K   D  +N +I
Sbjct: 618 PGGPGGGGGPPRGPGGGGGGGPTGPPAPPKPPAKPRGRPPRKSISPAVKNGHDDPENDTI 677


>Z46787-6|CAA86744.1|  392|Caenorhabditis elegans Hypothetical
           protein C16C10.6 protein.
          Length = 392

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 22/70 (31%), Positives = 33/70 (47%)
 Frame = +3

Query: 63  LRQRSVRATVPAYGNAGGGAPRGRELAGGMGPAGRVY*RNYGLPXGRRRSLPIFKTQRDT 242
           +RQR+   T P+  + G  APR R       P  R    +     G RRS P  K+++ +
Sbjct: 278 IRQRNYTPTPPSSDDEGARAPRARRRTSSPSPTSRKSIES--RESGSRRS-PEGKSEK-S 333

Query: 243 EQNTSIALPD 272
           E+   I+L D
Sbjct: 334 EKAPKISLKD 343


>Z77665-7|CAI46591.1|  360|Caenorhabditis elegans Hypothetical
           protein K02E11.10 protein.
          Length = 360

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = +3

Query: 84  ATVPAYGNAGGGAPRGRELAGGMG 155
           A  PA+G  GGG      L GG+G
Sbjct: 106 APAPAFGGLGGGYQAAPALGGGLG 129



 Score = 27.1 bits (57), Expect = 3.2
 Identities = 13/38 (34%), Positives = 17/38 (44%)
 Frame = +3

Query: 60  SLRQRSVRATVPAYGNAGGGAPRGRELAGGMGPAGRVY 173
           +L+   + A  PA+G  GGG      L GG    G  Y
Sbjct: 145 ALQLPGLGAPAPAFGGLGGGYQGAPTLGGGQAQGGAGY 182


>Z36282-2|CAA85288.3|  240|Caenorhabditis elegans Hypothetical
           protein K10G9.2 protein.
          Length = 240

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = +1

Query: 22  PTLTHARRSTCTGAYDRDPYAQQYQP 99
           P+L H+  STC+ +   +P+    QP
Sbjct: 203 PSLLHSNHSTCSSSSSSNPFTSYRQP 228


>Z35604-1|CAA84676.2|  744|Caenorhabditis elegans Hypothetical
           protein ZK1058.1 protein.
          Length = 744

 Score = 26.6 bits (56), Expect = 4.2
 Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 5/50 (10%)
 Frame = +1

Query: 16  VQPTLTH-ARRSTCTGAYDRDPYAQQYQPMGTLGAERRAVE----NSPEG 150
           ++PTL   + R + +GAY R P  Q++  M     + R  +    N+PEG
Sbjct: 6   LKPTLLRCSTRPSSSGAYTRSPIDQKWAAMAKKAMKGREADTLTWNTPEG 55


>AC024810-3|AAU20831.1|  660|Caenorhabditis elegans Vasa- and
           belle-like helicase protein1, isoform c protein.
          Length = 660

 Score = 26.6 bits (56), Expect = 4.2
 Identities = 13/22 (59%), Positives = 14/22 (63%), Gaps = 1/22 (4%)
 Frame = +3

Query: 93  PAYGNA-GGGAPRGRELAGGMG 155
           PAYG + GGGAPR     GG G
Sbjct: 583 PAYGGSFGGGAPRRPFTNGGFG 604


>AC024810-2|AAK68520.1|  644|Caenorhabditis elegans Vasa- and
           belle-like helicase protein1, isoform b protein.
          Length = 644

 Score = 26.6 bits (56), Expect = 4.2
 Identities = 13/22 (59%), Positives = 14/22 (63%), Gaps = 1/22 (4%)
 Frame = +3

Query: 93  PAYGNA-GGGAPRGRELAGGMG 155
           PAYG + GGGAPR     GG G
Sbjct: 567 PAYGGSFGGGAPRRPFTNGGFG 588


>AC024810-1|AAF60764.1|  641|Caenorhabditis elegans Vasa- and
           belle-like helicase protein1, isoform a protein.
          Length = 641

 Score = 26.6 bits (56), Expect = 4.2
 Identities = 13/22 (59%), Positives = 14/22 (63%), Gaps = 1/22 (4%)
 Frame = +3

Query: 93  PAYGNA-GGGAPRGRELAGGMG 155
           PAYG + GGGAPR     GG G
Sbjct: 564 PAYGGSFGGGAPRRPFTNGGFG 585


>Z93382-10|CAB07611.2| 1235|Caenorhabditis elegans Hypothetical
           protein F45G2.2a protein.
          Length = 1235

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 18/65 (27%), Positives = 24/65 (36%), Gaps = 3/65 (4%)
 Frame = +1

Query: 64  YDRDP---YAQQYQPMGTLGAERRAVENSPEGWVPREGCTSATTDFRLEEGEVYLFLKHN 234
           Y  DP   Y +Q Q         R  +N    WVP       T    ++EG+   F   +
Sbjct: 6   YMMDPGWKYLRQAQDEALKEQAARRFDNKTHAWVPDAAEGFVTAAVAVQEGDNLTFTMPD 65

Query: 235 VTPNK 249
            TP K
Sbjct: 66  GTPKK 70


>Z92826-4|CAB07322.1|  309|Caenorhabditis elegans Hypothetical
           protein C18D11.4 protein.
          Length = 309

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 13/25 (52%), Positives = 13/25 (52%)
 Frame = +3

Query: 60  SLRQRSVRATVPAYGNAGGGAPRGR 134
           S R RS RA     G  GGG  RGR
Sbjct: 39  SSRSRSPRARYGGGGGGGGGGGRGR 63


>Z82055-4|CAB04846.1|  330|Caenorhabditis elegans Hypothetical
           protein T26H2.4 protein.
          Length = 330

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 15/53 (28%), Positives = 24/53 (45%)
 Frame = +1

Query: 136 NSPEGWVPREGCTSATTDFRLEEGEVYLFLKHNVTPNKTHQ*RYRTIKYFVRD 294
           +SP   +     T   TD RL E +  LFLKH +    +   +  T+ + + D
Sbjct: 218 HSPNDLLNFNSSTVTITDSRLTEKDCNLFLKHWLLGISSQNLKLLTVCFLIDD 270


>Z68000-3|CAA91971.1| 1225|Caenorhabditis elegans Hypothetical
           protein C05C9.3 protein.
          Length = 1225

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = +1

Query: 160 REGCTSATTDFRLEEGEVYLFLKHNVTPNK 249
           +E   +   DF L++ EVY  LKH+ + N+
Sbjct: 731 KEFIENCDADFELQKAEVYGLLKHSDSRNQ 760


>U50312-9|AAA92325.1|  294|Caenorhabditis elegans Collagen protein
           10 protein.
          Length = 294

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 11/21 (52%), Positives = 11/21 (52%)
 Frame = +3

Query: 102 GNAGGGAPRGRELAGGMGPAG 164
           G  G GAP G    G  GPAG
Sbjct: 210 GQRGSGAPGGPGAPGNAGPAG 230


>U50312-7|AAA92323.2|  306|Caenorhabditis elegans Collagen protein
           144 protein.
          Length = 306

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 11/21 (52%), Positives = 11/21 (52%)
 Frame = +3

Query: 102 GNAGGGAPRGRELAGGMGPAG 164
           G  G GAP G    G  GPAG
Sbjct: 222 GQRGSGAPGGPGAPGNAGPAG 242


>AF000264-9|AAC71124.2|  232|Caenorhabditis elegans Hypothetical
           protein F43E2.2 protein.
          Length = 232

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 22/83 (26%), Positives = 39/83 (46%), Gaps = 4/83 (4%)
 Frame = +1

Query: 76  PYAQQYQPMGTLGAERRA----VENSPEGWVPREGCTSATTDFRLEEGEVYLFLKHNVTP 243
           PY   +  M + G  +++     E++ E   P+E  T  TT   L   EVYL L+H    
Sbjct: 81  PYCCLFSKMSSGGGNQKSDGQVEEDAAECKFPKEFET--TTCDALLTAEVYLLLEHRRQS 138

Query: 244 NKTHQ*RYRTIKYFVRDISYAIR 312
           +++        + F++ ++YA R
Sbjct: 139 SESKDEIEEMSEVFIKTLNYARR 161


>Z93377-1|CAB07573.1|  340|Caenorhabditis elegans Hypothetical
           protein F13A7.1 protein.
          Length = 340

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
 Frame = +3

Query: 57  GSLRQRSVRATVPAYGNA--GGGAPRGRELAGGMGPA 161
           GS+ Q S      A G+A  GGG  +   +AGGM  A
Sbjct: 256 GSVAQGSAAQGSAAQGSAAQGGGVAKSSSVAGGMNNA 292


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,667,808
Number of Sequences: 27780
Number of extensions: 146949
Number of successful extensions: 547
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 503
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 544
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 398409266
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)